miRNA display CGI


Results 81 - 100 of 393 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9060 5' -60.9 NC_002512.2 + 148521 0.66 0.806946
Target:  5'- gGCGgcCGccgCCCGcC-CCGGCCGCGa -3'
miRNA:   3'- gUGCaaGCa--GGGCuGcGGCCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 222171 0.67 0.79869
Target:  5'- -------aUCCCGACGCCuacucccgGGCCGCGg -3'
miRNA:   3'- gugcaagcAGGGCUGCGG--------CCGGCGCg -5'
9060 5' -60.9 NC_002512.2 + 117868 0.67 0.79869
Target:  5'- gACGUUCGgccgcaagaCgGACGCCGGgggcCCGuCGCu -3'
miRNA:   3'- gUGCAAGCag-------GgCUGCGGCC----GGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 141608 0.67 0.79869
Target:  5'- aGCcg-CGUCCCGAcaCGCCuGCCGC-Ca -3'
miRNA:   3'- gUGcaaGCAGGGCU--GCGGcCGGCGcG- -5'
9060 5' -60.9 NC_002512.2 + 223257 0.67 0.790304
Target:  5'- -uCGggCGUCCgCGuCGUCGgggggcgggacGCCGCGCg -3'
miRNA:   3'- guGCaaGCAGG-GCuGCGGC-----------CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 222636 0.67 0.773173
Target:  5'- gACGgaCGccgcuccgCCgCGACgGCCGGCCGgGCc -3'
miRNA:   3'- gUGCaaGCa-------GG-GCUG-CGGCCGGCgCG- -5'
9060 5' -60.9 NC_002512.2 + 190956 0.67 0.773173
Target:  5'- aCGCGggCG-CCCGccGCGgCGGCCccuccgGCGCc -3'
miRNA:   3'- -GUGCaaGCaGGGC--UGCgGCCGG------CGCG- -5'
9060 5' -60.9 NC_002512.2 + 155616 0.66 0.830871
Target:  5'- gACGUgCGgcgCCUGugcgaggagaGCCGGCgGCGCu -3'
miRNA:   3'- gUGCAaGCa--GGGCug--------CGGCCGgCGCG- -5'
9060 5' -60.9 NC_002512.2 + 151079 0.66 0.830871
Target:  5'- uGCGgucUCGgUCCG-CGCCGGagaCGUGCa -3'
miRNA:   3'- gUGCa--AGCaGGGCuGCGGCCg--GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 196626 0.66 0.838543
Target:  5'- --gGUUCG-CCCggGugGCCGacGCCGUGUg -3'
miRNA:   3'- gugCAAGCaGGG--CugCGGC--CGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 218949 0.67 0.763563
Target:  5'- gGCGUccUCGUCgaccccuCCGuCGCCGGCUGgGa -3'
miRNA:   3'- gUGCA--AGCAG-------GGCuGCGGCCGGCgCg -5'
9060 5' -60.9 NC_002512.2 + 180878 0.67 0.755609
Target:  5'- cCGCGUUCGUCaCGAacCGCaGGCCGUc- -3'
miRNA:   3'- -GUGCAAGCAGgGCU--GCGgCCGGCGcg -5'
9060 5' -60.9 NC_002512.2 + 90499 0.68 0.746683
Target:  5'- gACGggaUCGgggCCGAgGCCGGCgGCGg -3'
miRNA:   3'- gUGCa--AGCag-GGCUgCGGCCGgCGCg -5'
9060 5' -60.9 NC_002512.2 + 208801 0.68 0.73767
Target:  5'- gGCGgUCGcCCCGGagcgggacCGCCGcCCGUGCg -3'
miRNA:   3'- gUGCaAGCaGGGCU--------GCGGCcGGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 146440 0.68 0.73767
Target:  5'- gCACGacUUCGUCCgGGCGCacuucaGGCCGg-- -3'
miRNA:   3'- -GUGC--AAGCAGGgCUGCGg-----CCGGCgcg -5'
9060 5' -60.9 NC_002512.2 + 96093 0.66 0.8534
Target:  5'- gCGCGaccgUCGUcCCCGcCGCCG-CCGuCGUc -3'
miRNA:   3'- -GUGCa---AGCA-GGGCuGCGGCcGGC-GCG- -5'
9060 5' -60.9 NC_002512.2 + 95205 0.66 0.852673
Target:  5'- gGCGagCG-CCCGcuggugacggaucGCGUCGGCCcCGCa -3'
miRNA:   3'- gUGCaaGCaGGGC-------------UGCGGCCGGcGCG- -5'
9060 5' -60.9 NC_002512.2 + 202158 0.66 0.846055
Target:  5'- gGCGgguggUCGuUCCCGugGUCGuGacgggagaaCGCGCg -3'
miRNA:   3'- gUGCa----AGC-AGGGCugCGGC-Cg--------GCGCG- -5'
9060 5' -60.9 NC_002512.2 + 123634 0.66 0.846055
Target:  5'- gACGg--GUCCCGgggagagcGCGCCGcgguucCCGCGCg -3'
miRNA:   3'- gUGCaagCAGGGC--------UGCGGCc-----GGCGCG- -5'
9060 5' -60.9 NC_002512.2 + 205587 0.66 0.838543
Target:  5'- aCGCaGUUCGcCCCGcCGCUGucCCGCGg -3'
miRNA:   3'- -GUG-CAAGCaGGGCuGCGGCc-GGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.