miRNA display CGI


Results 1 - 20 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9065 3' -54.8 NC_002512.2 + 94427 0.66 0.987241
Target:  5'- aGUCGGCcgcgUCGaacgCCUGGuGGACGGCCu -3'
miRNA:   3'- gCAGCUG----AGCca--GGACU-UCUGCUGGc -5'
9065 3' -54.8 NC_002512.2 + 219706 0.66 0.987241
Target:  5'- gCGUCGgcGCUCGGggcgCgaGA-GGCGGCCc -3'
miRNA:   3'- -GCAGC--UGAGCCa---GgaCUuCUGCUGGc -5'
9065 3' -54.8 NC_002512.2 + 175502 0.66 0.987241
Target:  5'- aCGUCGuACuuggcgaugUCGGUCCaGAAGGCcuggaggguGGCCGc -3'
miRNA:   3'- -GCAGC-UG---------AGCCAGGaCUUCUG---------CUGGC- -5'
9065 3' -54.8 NC_002512.2 + 43729 0.66 0.987092
Target:  5'- aCGUCGAucuuauuCUCGGg---GAAGACG-CCGa -3'
miRNA:   3'- -GCAGCU-------GAGCCaggaCUUCUGCuGGC- -5'
9065 3' -54.8 NC_002512.2 + 153067 0.66 0.985685
Target:  5'- gGUCGGgUCGGcggUCgaGgcGGCGAUCGa -3'
miRNA:   3'- gCAGCUgAGCC---AGgaCuuCUGCUGGC- -5'
9065 3' -54.8 NC_002512.2 + 162233 0.66 0.985685
Target:  5'- gGUCGAgCcCGcGUCCgggGGcccguGGACGACCGu -3'
miRNA:   3'- gCAGCU-GaGC-CAGGa--CU-----UCUGCUGGC- -5'
9065 3' -54.8 NC_002512.2 + 187038 0.66 0.985685
Target:  5'- aCGagGAC-CGGgccucCCUGGAGACgGGCUGg -3'
miRNA:   3'- -GCagCUGaGCCa----GGACUUCUG-CUGGC- -5'
9065 3' -54.8 NC_002512.2 + 21320 0.66 0.985685
Target:  5'- gCGUCGAgCUCGG-CCU---GACGcACCGc -3'
miRNA:   3'- -GCAGCU-GAGCCaGGAcuuCUGC-UGGC- -5'
9065 3' -54.8 NC_002512.2 + 62221 0.66 0.983987
Target:  5'- aG-CGAgaCGcGUCCUGcGAGAgGACCGa -3'
miRNA:   3'- gCaGCUgaGC-CAGGAC-UUCUgCUGGC- -5'
9065 3' -54.8 NC_002512.2 + 134022 0.66 0.983987
Target:  5'- -cUCGGCgcgCGGcCCUGGgaGGACG-CCGc -3'
miRNA:   3'- gcAGCUGa--GCCaGGACU--UCUGCuGGC- -5'
9065 3' -54.8 NC_002512.2 + 126224 0.66 0.983987
Target:  5'- aCGUCGaggcGCUCGuGgCCgccGAGGAgGGCCGg -3'
miRNA:   3'- -GCAGC----UGAGC-CaGGa--CUUCUgCUGGC- -5'
9065 3' -54.8 NC_002512.2 + 225976 0.66 0.983987
Target:  5'- aCGaCGAC-CGGUCUcGggGGCaagggGACCGg -3'
miRNA:   3'- -GCaGCUGaGCCAGGaCuuCUG-----CUGGC- -5'
9065 3' -54.8 NC_002512.2 + 146182 0.66 0.983987
Target:  5'- gCG-CGGCaCGGUcgcCCUGGGcucGACGACCGu -3'
miRNA:   3'- -GCaGCUGaGCCA---GGACUU---CUGCUGGC- -5'
9065 3' -54.8 NC_002512.2 + 71521 0.66 0.983987
Target:  5'- uGUCGACaacaCGGcCCgaaAAGGCGACUGu -3'
miRNA:   3'- gCAGCUGa---GCCaGGac-UUCUGCUGGC- -5'
9065 3' -54.8 NC_002512.2 + 103576 0.66 0.982141
Target:  5'- uCGUCGuccaGGagcaUCCUGGAGAUGaACCGg -3'
miRNA:   3'- -GCAGCugagCC----AGGACUUCUGC-UGGC- -5'
9065 3' -54.8 NC_002512.2 + 126335 0.66 0.980139
Target:  5'- --aCGACcgcuuUCGG-CUggUGGAGACGGCCGg -3'
miRNA:   3'- gcaGCUG-----AGCCaGG--ACUUCUGCUGGC- -5'
9065 3' -54.8 NC_002512.2 + 217825 0.66 0.980139
Target:  5'- uCGUCGACggcgggCGGUUCggcaGAGGCGGCa- -3'
miRNA:   3'- -GCAGCUGa-----GCCAGGac--UUCUGCUGgc -5'
9065 3' -54.8 NC_002512.2 + 153152 0.66 0.980139
Target:  5'- gGUCG---CGGUCCgGAAaGGCGACCu -3'
miRNA:   3'- gCAGCugaGCCAGGaCUU-CUGCUGGc -5'
9065 3' -54.8 NC_002512.2 + 122226 0.66 0.980139
Target:  5'- aCGgCGACggUGGUCCUGAGGcUGAgCCa -3'
miRNA:   3'- -GCaGCUGa-GCCAGGACUUCuGCU-GGc -5'
9065 3' -54.8 NC_002512.2 + 129558 0.66 0.977975
Target:  5'- gCGUCGACgaGGcCCgGGAGGCcguGGCCGa -3'
miRNA:   3'- -GCAGCUGagCCaGGaCUUCUG---CUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.