miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9065 5' -60 NC_002512.2 + 111820 0.66 0.854838
Target:  5'- aGCCGCccCCUC-CGCGGAgucgaGCCCgGgCAc -3'
miRNA:   3'- -UGGCGa-GGAGaGCGCUU-----UGGGgCgGU- -5'
9065 5' -60 NC_002512.2 + 39982 0.66 0.854838
Target:  5'- aGCCGCcgUCCUCgcCGCcgu-CCUCGCCGc -3'
miRNA:   3'- -UGGCG--AGGAGa-GCGcuuuGGGGCGGU- -5'
9065 5' -60 NC_002512.2 + 65306 0.66 0.854838
Target:  5'- cGCCGCgUCCUCcC-CGGAguacGCCuuGCCGc -3'
miRNA:   3'- -UGGCG-AGGAGaGcGCUU----UGGggCGGU- -5'
9065 5' -60 NC_002512.2 + 187620 0.66 0.854838
Target:  5'- gAUCGaauCUCCUCUCGUucu-CCCCaGCCAu -3'
miRNA:   3'- -UGGC---GAGGAGAGCGcuuuGGGG-CGGU- -5'
9065 5' -60 NC_002512.2 + 1101 0.66 0.847358
Target:  5'- cCCuCUCCUCUCcCGu--CUCCGCCGu -3'
miRNA:   3'- uGGcGAGGAGAGcGCuuuGGGGCGGU- -5'
9065 5' -60 NC_002512.2 + 3496 0.66 0.847358
Target:  5'- cGCCGaCUCCUgCgUCGC-AGGCCCacgCGCCGa -3'
miRNA:   3'- -UGGC-GAGGA-G-AGCGcUUUGGG---GCGGU- -5'
9065 5' -60 NC_002512.2 + 138617 0.66 0.847358
Target:  5'- cACCGuCUCa-UUCGCGAAcagggggaccACCCCGaCCGa -3'
miRNA:   3'- -UGGC-GAGgaGAGCGCUU----------UGGGGC-GGU- -5'
9065 5' -60 NC_002512.2 + 191651 0.66 0.847358
Target:  5'- gUCGCcuUUCUgUCGCGAGGCCgucuCCGCUAu -3'
miRNA:   3'- uGGCG--AGGAgAGCGCUUUGG----GGCGGU- -5'
9065 5' -60 NC_002512.2 + 37867 0.66 0.847358
Target:  5'- cGCCGCUCC---CGCG----CCCGCCAg -3'
miRNA:   3'- -UGGCGAGGagaGCGCuuugGGGCGGU- -5'
9065 5' -60 NC_002512.2 + 154745 0.66 0.8466
Target:  5'- gGCCGCgUCCgacggCgUCGCGguGCCcgucuccccguguCCGCCAg -3'
miRNA:   3'- -UGGCG-AGGa----G-AGCGCuuUGG-------------GGCGGU- -5'
9065 5' -60 NC_002512.2 + 123388 0.66 0.84508
Target:  5'- cCCGCgcggggaguUCUUCUCGgacggcgaggcgguCGAggUCCCGCCGc -3'
miRNA:   3'- uGGCG---------AGGAGAGC--------------GCUuuGGGGCGGU- -5'
9065 5' -60 NC_002512.2 + 155382 0.66 0.844317
Target:  5'- gACCGCgaggcuggcgaggUCCUCUCcguccugucgcucuGCGAccgggaguGCCCCGUCGu -3'
miRNA:   3'- -UGGCG-------------AGGAGAG--------------CGCUu-------UGGGGCGGU- -5'
9065 5' -60 NC_002512.2 + 132551 0.66 0.839703
Target:  5'- cGCCGUcggCCUCUcCGCccucGACCCCGgCGg -3'
miRNA:   3'- -UGGCGa--GGAGA-GCGcu--UUGGGGCgGU- -5'
9065 5' -60 NC_002512.2 + 180899 0.66 0.839703
Target:  5'- gGCCGUcuUCCagCUcCGCGuu-CUCCGCCAc -3'
miRNA:   3'- -UGGCG--AGGa-GA-GCGCuuuGGGGCGGU- -5'
9065 5' -60 NC_002512.2 + 164141 0.66 0.838928
Target:  5'- uCCGCuUCCUCuucacccagaucaUCGagGAcACCCCGCCc -3'
miRNA:   3'- uGGCG-AGGAG-------------AGCg-CUuUGGGGCGGu -5'
9065 5' -60 NC_002512.2 + 27374 0.66 0.831879
Target:  5'- cGCCGCcgCCUC-CGCcu--CCgCCGCCGa -3'
miRNA:   3'- -UGGCGa-GGAGaGCGcuuuGG-GGCGGU- -5'
9065 5' -60 NC_002512.2 + 116632 0.66 0.831879
Target:  5'- gGCCGCcCCcCUCGCugccGAGGCuCCUGCUg -3'
miRNA:   3'- -UGGCGaGGaGAGCG----CUUUG-GGGCGGu -5'
9065 5' -60 NC_002512.2 + 109072 0.66 0.831879
Target:  5'- cGCCGCgUCCcgggUC-CGaGAGACCgCCGCCGu -3'
miRNA:   3'- -UGGCG-AGG----AGaGCgCUUUGG-GGCGGU- -5'
9065 5' -60 NC_002512.2 + 183327 0.66 0.831087
Target:  5'- cCCGCUUCUUcagcCGCGAGACCCUcauggagGUCGa -3'
miRNA:   3'- uGGCGAGGAGa---GCGCUUUGGGG-------CGGU- -5'
9065 5' -60 NC_002512.2 + 28779 0.66 0.831087
Target:  5'- cACCGCgaccugugCCUCaucuUCGUGGgcaugcugucccaGACCCCGCaCAu -3'
miRNA:   3'- -UGGCGa-------GGAG----AGCGCU-------------UUGGGGCG-GU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.