miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9066 3' -53.2 NC_002512.2 + 131009 0.66 0.992134
Target:  5'- uCGUCUUCGUcu-UCGacGCGCUCGAg -3'
miRNA:   3'- uGCAGGAGCAaccAGUaaCGCGAGCU- -5'
9066 3' -53.2 NC_002512.2 + 186294 0.66 0.992134
Target:  5'- cGCGUCCUCGUccgcgacgccgUGGUCAUcgGCaacgucCUCa- -3'
miRNA:   3'- -UGCAGGAGCA-----------ACCAGUAa-CGc-----GAGcu -5'
9066 3' -53.2 NC_002512.2 + 114098 0.66 0.991029
Target:  5'- gUGUCCgCGUaGGUCAg-GCGCUgCGGg -3'
miRNA:   3'- uGCAGGaGCAaCCAGUaaCGCGA-GCU- -5'
9066 3' -53.2 NC_002512.2 + 108332 0.66 0.991029
Target:  5'- cACGUCCUCcagcGUCuc-GUGCUCGAc -3'
miRNA:   3'- -UGCAGGAGcaacCAGuaaCGCGAGCU- -5'
9066 3' -53.2 NC_002512.2 + 104754 0.66 0.989544
Target:  5'- cCGUCCUCGUcgccgucgucccGGUCGgacgGCGCguggCGGg -3'
miRNA:   3'- uGCAGGAGCAa-----------CCAGUaa--CGCGa---GCU- -5'
9066 3' -53.2 NC_002512.2 + 126435 0.66 0.989279
Target:  5'- cGCGUCCUCGgaccc----GCGCUCGGa -3'
miRNA:   3'- -UGCAGGAGCaaccaguaaCGCGAGCU- -5'
9066 3' -53.2 NC_002512.2 + 139112 0.66 0.988453
Target:  5'- cGCGUcaCCUCGUUGGcCAagaaGCGCUUc- -3'
miRNA:   3'- -UGCA--GGAGCAACCaGUaa--CGCGAGcu -5'
9066 3' -53.2 NC_002512.2 + 94647 0.67 0.985337
Target:  5'- cUGUCCUCGgUGGugaUCGUcGCGgUCGGc -3'
miRNA:   3'- uGCAGGAGCaACC---AGUAaCGCgAGCU- -5'
9066 3' -53.2 NC_002512.2 + 153713 0.67 0.981617
Target:  5'- cACGUCCUgGUcgGGUCucacgGCGCUg-- -3'
miRNA:   3'- -UGCAGGAgCAa-CCAGuaa--CGCGAgcu -5'
9066 3' -53.2 NC_002512.2 + 124382 0.67 0.97723
Target:  5'- gGCGUCCUgCGcgagaggcUGGUCGUcgacGgGCUCGAg -3'
miRNA:   3'- -UGCAGGA-GCa-------ACCAGUAa---CgCGAGCU- -5'
9066 3' -53.2 NC_002512.2 + 189052 0.67 0.97723
Target:  5'- aAUGUCCUCGgagcGGcCGgcgGCGCUCu- -3'
miRNA:   3'- -UGCAGGAGCaa--CCaGUaa-CGCGAGcu -5'
9066 3' -53.2 NC_002512.2 + 161867 0.68 0.974768
Target:  5'- -gGUCCUCccgGGUCggUGCGuCUCGu -3'
miRNA:   3'- ugCAGGAGcaaCCAGuaACGC-GAGCu -5'
9066 3' -53.2 NC_002512.2 + 184516 0.68 0.973201
Target:  5'- cGCGUCCUCGUcgcagcagucgcggGGUCAgccggcgGCGCgggcCGGc -3'
miRNA:   3'- -UGCAGGAGCAa-------------CCAGUaa-----CGCGa---GCU- -5'
9066 3' -53.2 NC_002512.2 + 202113 0.69 0.943438
Target:  5'- cGCGUCCUCGUcagcUGGUg---GCGC-CGGu -3'
miRNA:   3'- -UGCAGGAGCA----ACCAguaaCGCGaGCU- -5'
9066 3' -53.2 NC_002512.2 + 169097 0.7 0.918177
Target:  5'- cGCGUCCUCGUccucgCGggGCGUUCGGu -3'
miRNA:   3'- -UGCAGGAGCAacca-GUaaCGCGAGCU- -5'
9066 3' -53.2 NC_002512.2 + 112889 0.7 0.912424
Target:  5'- gGCGUUCUCGUcGGUCGccGCgucgcggaccaGCUCGAu -3'
miRNA:   3'- -UGCAGGAGCAaCCAGUaaCG-----------CGAGCU- -5'
9066 3' -53.2 NC_002512.2 + 195373 0.72 0.842671
Target:  5'- gGCGUCCUCGgauaGGUCca--CGCUCGGu -3'
miRNA:   3'- -UGCAGGAGCaa--CCAGuaacGCGAGCU- -5'
9066 3' -53.2 NC_002512.2 + 120449 0.73 0.800449
Target:  5'- cCGUCCUCGcUGGU-GUUGCGCaUCGu -3'
miRNA:   3'- uGCAGGAGCaACCAgUAACGCG-AGCu -5'
9066 3' -53.2 NC_002512.2 + 217593 0.75 0.715812
Target:  5'- gGCGccgCCUCGggGGUCGUcgGCGaCUCGGg -3'
miRNA:   3'- -UGCa--GGAGCaaCCAGUAa-CGC-GAGCU- -5'
9066 3' -53.2 NC_002512.2 + 217668 0.75 0.705939
Target:  5'- aACGUCCUCG--GGUCcggGCGCUUGGg -3'
miRNA:   3'- -UGCAGGAGCaaCCAGuaaCGCGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.