miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9066 5' -52.1 NC_002512.2 + 140967 0.66 0.998395
Target:  5'- -cUCGGucGCGUGGUGACCGaUCGGaUCGg -3'
miRNA:   3'- guAGCU--UGCACUGCUGGC-AGCUcAGC- -5'
9066 5' -52.1 NC_002512.2 + 131728 0.66 0.998395
Target:  5'- cCGUCcaGACGcGGCGACCGcCGGGgCGg -3'
miRNA:   3'- -GUAGc-UUGCaCUGCUGGCaGCUCaGC- -5'
9066 5' -52.1 NC_002512.2 + 154667 0.66 0.998395
Target:  5'- cCGUCcGACGUcgGGCGACCGUccgcucCGAG-CGg -3'
miRNA:   3'- -GUAGcUUGCA--CUGCUGGCA------GCUCaGC- -5'
9066 5' -52.1 NC_002512.2 + 60912 0.66 0.998092
Target:  5'- gGUCGAGCG-GAcacCGACCGcgaagcgcuUCGcGUCGg -3'
miRNA:   3'- gUAGCUUGCaCU---GCUGGC---------AGCuCAGC- -5'
9066 5' -52.1 NC_002512.2 + 32682 0.66 0.998092
Target:  5'- uGUCGAAgcCGUaGACGGCCccgagCGGGUCc -3'
miRNA:   3'- gUAGCUU--GCA-CUGCUGGca---GCUCAGc -5'
9066 5' -52.1 NC_002512.2 + 29225 0.66 0.998092
Target:  5'- --cCGAACGc--CGGCCG-CGGGUCGc -3'
miRNA:   3'- guaGCUUGCacuGCUGGCaGCUCAGC- -5'
9066 5' -52.1 NC_002512.2 + 11397 0.66 0.998092
Target:  5'- -cUCGGACGcgGACGACCcG-CGGGaCGa -3'
miRNA:   3'- guAGCUUGCa-CUGCUGG-CaGCUCaGC- -5'
9066 5' -52.1 NC_002512.2 + 4996 0.66 0.998092
Target:  5'- --gCGAACGggucgaaGGCGGCCGgCGAGgCGg -3'
miRNA:   3'- guaGCUUGCa------CUGCUGGCaGCUCaGC- -5'
9066 5' -52.1 NC_002512.2 + 96653 0.66 0.997743
Target:  5'- gAUCGGACG-GGcCGGCCGUcaccucuucuaCGAGgUCGa -3'
miRNA:   3'- gUAGCUUGCaCU-GCUGGCA-----------GCUC-AGC- -5'
9066 5' -52.1 NC_002512.2 + 126093 0.66 0.997743
Target:  5'- -cUCGGACGUGAUcACCGa--GGUCGg -3'
miRNA:   3'- guAGCUUGCACUGcUGGCagcUCAGC- -5'
9066 5' -52.1 NC_002512.2 + 183729 0.66 0.997743
Target:  5'- gUAUCcaccAGCGUGGCGACaUGUCGuucGUCGc -3'
miRNA:   3'- -GUAGc---UUGCACUGCUG-GCAGCu--CAGC- -5'
9066 5' -52.1 NC_002512.2 + 195236 0.66 0.997743
Target:  5'- gGUUGAcuuugaacgACGUGAUGAUCGUCGAcacaggCGg -3'
miRNA:   3'- gUAGCU---------UGCACUGCUGGCAGCUca----GC- -5'
9066 5' -52.1 NC_002512.2 + 152455 0.66 0.997743
Target:  5'- gGUCGucCGUGAgGGCgUGUCGGG-CGg -3'
miRNA:   3'- gUAGCuuGCACUgCUG-GCAGCUCaGC- -5'
9066 5' -52.1 NC_002512.2 + 109847 0.66 0.997743
Target:  5'- gCGUCGGggaccgGCGUGGCGGCgGUgGGGa-- -3'
miRNA:   3'- -GUAGCU------UGCACUGCUGgCAgCUCagc -5'
9066 5' -52.1 NC_002512.2 + 46275 0.66 0.997342
Target:  5'- gCAUgGAGCagGUGAUGAgacaCGUCGAGcCGg -3'
miRNA:   3'- -GUAgCUUG--CACUGCUg---GCAGCUCaGC- -5'
9066 5' -52.1 NC_002512.2 + 127739 0.66 0.997342
Target:  5'- uCAUCGAAgGUGAUGAUgCGU--AGUCGc -3'
miRNA:   3'- -GUAGCUUgCACUGCUG-GCAgcUCAGC- -5'
9066 5' -52.1 NC_002512.2 + 155445 0.66 0.997342
Target:  5'- uCAUCGAG-GUGAgCGAcgcgccgggaCCGUCG-GUCGa -3'
miRNA:   3'- -GUAGCUUgCACU-GCU----------GGCAGCuCAGC- -5'
9066 5' -52.1 NC_002512.2 + 77786 0.66 0.997342
Target:  5'- gGUCGGGCG-GACGGuuCCuUCGAGUgCGu -3'
miRNA:   3'- gUAGCUUGCaCUGCU--GGcAGCUCA-GC- -5'
9066 5' -52.1 NC_002512.2 + 100287 0.66 0.996883
Target:  5'- --gCGAGCGgGGCGAguUCGUCGGGggCGa -3'
miRNA:   3'- guaGCUUGCaCUGCU--GGCAGCUCa-GC- -5'
9066 5' -52.1 NC_002512.2 + 12267 0.66 0.996883
Target:  5'- --aCGAGaccCGUGGCG-CCGccCGAGUCGc -3'
miRNA:   3'- guaGCUU---GCACUGCuGGCa-GCUCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.