miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9067 3' -54.2 NC_002512.2 + 45360 0.66 0.980974
Target:  5'- uCUGCGUcGUG-AUCGCuacGGcCAUCUUACu -3'
miRNA:   3'- -GACGCA-CACgUAGCG---CCuGUAGGAUG- -5'
9067 3' -54.2 NC_002512.2 + 86642 0.66 0.97881
Target:  5'- -cGCGgugugGUGgAUCGCGGuggccGCGUCCg-- -3'
miRNA:   3'- gaCGCa----CACgUAGCGCC-----UGUAGGaug -5'
9067 3' -54.2 NC_002512.2 + 72049 0.66 0.97881
Target:  5'- gCUGCGcGUGCcgcuuguagaagGUCGCGGccggcccccgcaGCGaCCUGCa -3'
miRNA:   3'- -GACGCaCACG------------UAGCGCC------------UGUaGGAUG- -5'
9067 3' -54.2 NC_002512.2 + 137059 0.66 0.973946
Target:  5'- -gGCGUGaUGaCGgagGCGGGCAUgCUGCa -3'
miRNA:   3'- gaCGCAC-AC-GUag-CGCCUGUAgGAUG- -5'
9067 3' -54.2 NC_002512.2 + 89763 0.67 0.968317
Target:  5'- -cGCGgucgGCG-CGCGGGCAUCUgACa -3'
miRNA:   3'- gaCGCaca-CGUaGCGCCUGUAGGaUG- -5'
9067 3' -54.2 NC_002512.2 + 154731 0.67 0.968317
Target:  5'- -gGCGU-UGCGUcCGCGGccGCGUCCgacgGCg -3'
miRNA:   3'- gaCGCAcACGUA-GCGCC--UGUAGGa---UG- -5'
9067 3' -54.2 NC_002512.2 + 10482 0.67 0.9652
Target:  5'- -gGCGUGgGCGUCGCGG-CGggCCg-- -3'
miRNA:   3'- gaCGCACaCGUAGCGCCuGUa-GGaug -5'
9067 3' -54.2 NC_002512.2 + 90101 0.67 0.961874
Target:  5'- gUGCGUGUaugucuucuGgAUCGCGGGCGcCCggUGCg -3'
miRNA:   3'- gACGCACA---------CgUAGCGCCUGUaGG--AUG- -5'
9067 3' -54.2 NC_002512.2 + 96212 0.67 0.961874
Target:  5'- --cCGUG-GCGUUGCGGgucGCGUUCUGCu -3'
miRNA:   3'- gacGCACaCGUAGCGCC---UGUAGGAUG- -5'
9067 3' -54.2 NC_002512.2 + 91653 0.67 0.956857
Target:  5'- -gGCGUcGUGUugaugagcugcgCGCGGACGUCCgucgGCc -3'
miRNA:   3'- gaCGCA-CACGua----------GCGCCUGUAGGa---UG- -5'
9067 3' -54.2 NC_002512.2 + 187759 0.67 0.956105
Target:  5'- gCUGCGU-UGCGUCGUccgcucgcucaaGGACAacaccacggucaccuUCCUGCc -3'
miRNA:   3'- -GACGCAcACGUAGCG------------CCUGU---------------AGGAUG- -5'
9067 3' -54.2 NC_002512.2 + 71381 0.67 0.954574
Target:  5'- -aGCGcUGgcGCAggcCGCGGAaGUCCUGCg -3'
miRNA:   3'- gaCGC-ACa-CGUa--GCGCCUgUAGGAUG- -5'
9067 3' -54.2 NC_002512.2 + 66384 0.68 0.937275
Target:  5'- --uCGUGUGCGcaaUCGCGGGCGcuUUUUACa -3'
miRNA:   3'- gacGCACACGU---AGCGCCUGU--AGGAUG- -5'
9067 3' -54.2 NC_002512.2 + 81895 0.68 0.937275
Target:  5'- -cGUG-GUGUAcUCGCGGAgGUCgUGCg -3'
miRNA:   3'- gaCGCaCACGU-AGCGCCUgUAGgAUG- -5'
9067 3' -54.2 NC_002512.2 + 173328 0.69 0.927234
Target:  5'- cCUGCGggGUcuucggucccgGCAcgCGCcuGGACGUCCUGCu -3'
miRNA:   3'- -GACGCa-CA-----------CGUa-GCG--CCUGUAGGAUG- -5'
9067 3' -54.2 NC_002512.2 + 128297 0.69 0.910416
Target:  5'- gUGCGgGUGCAcgcccgagUCGCGG-CA-CCUGCu -3'
miRNA:   3'- gACGCaCACGU--------AGCGCCuGUaGGAUG- -5'
9067 3' -54.2 NC_002512.2 + 169079 0.7 0.891515
Target:  5'- -gGCGgcgGCGUCGCGGcccGCGUCCUc- -3'
miRNA:   3'- gaCGCacaCGUAGCGCC---UGUAGGAug -5'
9067 3' -54.2 NC_002512.2 + 179310 0.7 0.877793
Target:  5'- -cGCGggcgGCGagGCGGGCAgaUCCUGCa -3'
miRNA:   3'- gaCGCaca-CGUagCGCCUGU--AGGAUG- -5'
9067 3' -54.2 NC_002512.2 + 211555 0.71 0.831646
Target:  5'- -gGCGUGUGCcgCG-GGAUGUCCccaUGCg -3'
miRNA:   3'- gaCGCACACGuaGCgCCUGUAGG---AUG- -5'
9067 3' -54.2 NC_002512.2 + 198966 0.71 0.831646
Target:  5'- -cGCGUGgcgucGCGUCGCGuGAUGUCCg-- -3'
miRNA:   3'- gaCGCACa----CGUAGCGC-CUGUAGGaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.