miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9067 5' -58.6 NC_002512.2 + 153639 0.66 0.890305
Target:  5'- uCGGCGGACGggagCGgGgGCAcGCUCcUCa -3'
miRNA:   3'- -GCUGCCUGCag--GCgCgCGU-CGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 108331 0.66 0.890305
Target:  5'- gCGGCGGGCGgUCG-GCGCGGCa---- -3'
miRNA:   3'- -GCUGCCUGCaGGCgCGCGUCGaguag -5'
9067 5' -58.6 NC_002512.2 + 83195 0.66 0.890305
Target:  5'- cCGuCGccCGUCCGCGCGCggGGCggggggagCGUCg -3'
miRNA:   3'- -GCuGCcuGCAGGCGCGCG--UCGa-------GUAG- -5'
9067 5' -58.6 NC_002512.2 + 76604 0.66 0.890305
Target:  5'- gCGuCGGACGUCUGUcCGgGGCcgcCAUCg -3'
miRNA:   3'- -GCuGCCUGCAGGCGcGCgUCGa--GUAG- -5'
9067 5' -58.6 NC_002512.2 + 105010 0.66 0.890305
Target:  5'- cCGcACGGGCGcgucgagCCcCGCGCAGgUCAUg -3'
miRNA:   3'- -GC-UGCCUGCa------GGcGCGCGUCgAGUAg -5'
9067 5' -58.6 NC_002512.2 + 134332 0.66 0.890305
Target:  5'- cCGACGGACucgCCGCG-GCcgAGCUCc-- -3'
miRNA:   3'- -GCUGCCUGca-GGCGCgCG--UCGAGuag -5'
9067 5' -58.6 NC_002512.2 + 156062 0.66 0.890305
Target:  5'- aCGGCGaggcucaucGACG-CCGgGCGCcggcAGUUCGUCg -3'
miRNA:   3'- -GCUGC---------CUGCaGGCgCGCG----UCGAGUAG- -5'
9067 5' -58.6 NC_002512.2 + 147276 0.66 0.890305
Target:  5'- cCGACccgGGACG-CCGCGCGUcGUUCc-- -3'
miRNA:   3'- -GCUG---CCUGCaGGCGCGCGuCGAGuag -5'
9067 5' -58.6 NC_002512.2 + 132528 0.66 0.890305
Target:  5'- -cGCGGucccCGcUCCGCGgGCGGCgcCGUCg -3'
miRNA:   3'- gcUGCCu---GC-AGGCGCgCGUCGa-GUAG- -5'
9067 5' -58.6 NC_002512.2 + 101832 0.66 0.889663
Target:  5'- aCGAC-GACG-CCGCgaccgucggggccGUGCAGCUCuUCg -3'
miRNA:   3'- -GCUGcCUGCaGGCG-------------CGCGUCGAGuAG- -5'
9067 5' -58.6 NC_002512.2 + 102693 0.66 0.883786
Target:  5'- cCGucuCGGGCGUCgGCGaCGCAGUg---- -3'
miRNA:   3'- -GCu--GCCUGCAGgCGC-GCGUCGaguag -5'
9067 5' -58.6 NC_002512.2 + 133861 0.66 0.883786
Target:  5'- cCGA-GGACGUCCuGgG-GCGGCUCGa- -3'
miRNA:   3'- -GCUgCCUGCAGG-CgCgCGUCGAGUag -5'
9067 5' -58.6 NC_002512.2 + 128805 0.66 0.883786
Target:  5'- cCGGC-GugGUCCGCGgGCGGgccCUCGa- -3'
miRNA:   3'- -GCUGcCugCAGGCGCgCGUC---GAGUag -5'
9067 5' -58.6 NC_002512.2 + 28579 0.66 0.883786
Target:  5'- aGACGGAgcUGaUCCGaGCGguGCgCGUCa -3'
miRNA:   3'- gCUGCCU--GC-AGGCgCGCguCGaGUAG- -5'
9067 5' -58.6 NC_002512.2 + 93800 0.66 0.883786
Target:  5'- uGACGGGCGUCCGaGC-CGGCc---- -3'
miRNA:   3'- gCUGCCUGCAGGCgCGcGUCGaguag -5'
9067 5' -58.6 NC_002512.2 + 159003 0.66 0.883786
Target:  5'- gCGGCGGccccgGCGUCCGCGCcggGCGGaccgacgacuuCUCcgCg -3'
miRNA:   3'- -GCUGCC-----UGCAGGCGCG---CGUC-----------GAGuaG- -5'
9067 5' -58.6 NC_002512.2 + 208563 0.66 0.883786
Target:  5'- gGGCGGuGCGUCaggccgaguCGaCGCGCAGCggGUCc -3'
miRNA:   3'- gCUGCC-UGCAG---------GC-GCGCGUCGagUAG- -5'
9067 5' -58.6 NC_002512.2 + 154721 0.66 0.883786
Target:  5'- gCGACGGaacggcguuGCGUCCGCG-GCcGCguccgacggCGUCg -3'
miRNA:   3'- -GCUGCC---------UGCAGGCGCgCGuCGa--------GUAG- -5'
9067 5' -58.6 NC_002512.2 + 212173 0.66 0.883786
Target:  5'- aCGGCuGGGcCGUCCagGCGCGCAacgucacgcuGCUCGa- -3'
miRNA:   3'- -GCUG-CCU-GCAGG--CGCGCGU----------CGAGUag -5'
9067 5' -58.6 NC_002512.2 + 40646 0.66 0.877746
Target:  5'- cCGACGGugACGUCCGCGa-CGGCgacggacggauccgaCGUCg -3'
miRNA:   3'- -GCUGCC--UGCAGGCGCgcGUCGa--------------GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.