miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9070 3' -55.1 NC_002512.2 + 31295 0.66 0.973864
Target:  5'- gUCAGCgUgaacacaUCGGGAGGUGAAGacGUcUCACa -3'
miRNA:   3'- -GGUCGgA-------GGUCCUCCACUUC--CA-AGUG- -5'
9070 3' -55.1 NC_002512.2 + 86220 0.66 0.968577
Target:  5'- cCCGGCUUCgGGGAGGgggacgaGGAGGa---- -3'
miRNA:   3'- -GGUCGGAGgUCCUCCa------CUUCCaagug -5'
9070 3' -55.1 NC_002512.2 + 132483 0.66 0.967374
Target:  5'- gCCAGCC-CCAGGAGGaacugcgUCAUg -3'
miRNA:   3'- -GGUCGGaGGUCCUCCacuuccaAGUG- -5'
9070 3' -55.1 NC_002512.2 + 206093 0.66 0.96519
Target:  5'- gCAGCUgcaggUUCGGGAGGUGGgacaccaGGGUcaggCGCa -3'
miRNA:   3'- gGUCGG-----AGGUCCUCCACU-------UCCAa---GUG- -5'
9070 3' -55.1 NC_002512.2 + 21542 0.66 0.962234
Target:  5'- aCCuG-CUCCucGGGGGUGAGGGUgUCGu -3'
miRNA:   3'- -GGuCgGAGGu-CCUCCACUUCCA-AGUg -5'
9070 3' -55.1 NC_002512.2 + 86160 0.66 0.95839
Target:  5'- gCC-GCCUCCgaggcccugcugcGGGAGcUGGAGGU-CGCg -3'
miRNA:   3'- -GGuCGGAGG-------------UCCUCcACUUCCAaGUG- -5'
9070 3' -55.1 NC_002512.2 + 174255 0.67 0.955052
Target:  5'- cCCucGCCcgggUCCGGGucccgGGGUcucGggGGUUCGCg -3'
miRNA:   3'- -GGu-CGG----AGGUCC-----UCCA---CuuCCAAGUG- -5'
9070 3' -55.1 NC_002512.2 + 57274 0.67 0.955052
Target:  5'- cUCAGCCUCCGGuGAuagaccgGGAGGU-CGCa -3'
miRNA:   3'- -GGUCGGAGGUC-CUcca----CUUCCAaGUG- -5'
9070 3' -55.1 NC_002512.2 + 199068 0.67 0.951135
Target:  5'- cUCAGCCguugguagUCCAGGcccgAGGUGGccgccAGGUcCACg -3'
miRNA:   3'- -GGUCGG--------AGGUCC----UCCACU-----UCCAaGUG- -5'
9070 3' -55.1 NC_002512.2 + 3989 0.67 0.946997
Target:  5'- --cGCgCUCCucGGGAGGcGggGGgcgUCGCa -3'
miRNA:   3'- gguCG-GAGG--UCCUCCaCuuCCa--AGUG- -5'
9070 3' -55.1 NC_002512.2 + 159878 0.67 0.942633
Target:  5'- aCCGGaCg-CAGGGGGUGGAGGUgugUCGa -3'
miRNA:   3'- -GGUCgGagGUCCUCCACUUCCA---AGUg -5'
9070 3' -55.1 NC_002512.2 + 91294 0.67 0.942633
Target:  5'- aCCcGCCUgaAGGAGGUGucGGcggCGCa -3'
miRNA:   3'- -GGuCGGAggUCCUCCACuuCCaa-GUG- -5'
9070 3' -55.1 NC_002512.2 + 108437 0.67 0.938043
Target:  5'- -gGGCCgggggCCGGGGGGUcccuccccgggcGGcgccGGGUUCGCg -3'
miRNA:   3'- ggUCGGa----GGUCCUCCA------------CU----UCCAAGUG- -5'
9070 3' -55.1 NC_002512.2 + 108237 0.68 0.933223
Target:  5'- gCCAGUCUCCccagcAGGAucuuGGUGAGGccgCACg -3'
miRNA:   3'- -GGUCGGAGG-----UCCU----CCACUUCcaaGUG- -5'
9070 3' -55.1 NC_002512.2 + 20610 0.68 0.928174
Target:  5'- gCAGCgCUCCacguccucgaAGGAGGUcc-GGUUCGCc -3'
miRNA:   3'- gGUCG-GAGG----------UCCUCCAcuuCCAAGUG- -5'
9070 3' -55.1 NC_002512.2 + 16017 0.68 0.928174
Target:  5'- gUCGGCCgCCGGGuGGgGAAGGgcaGCg -3'
miRNA:   3'- -GGUCGGaGGUCCuCCaCUUCCaagUG- -5'
9070 3' -55.1 NC_002512.2 + 199188 0.68 0.922895
Target:  5'- aCGGCCUCCAuGAGGUcGuacGGGUUguCg -3'
miRNA:   3'- gGUCGGAGGUcCUCCA-Cu--UCCAAguG- -5'
9070 3' -55.1 NC_002512.2 + 223041 0.68 0.911647
Target:  5'- uCCGGCgaggUCCGGGAGGUGccccuGG-UCGCc -3'
miRNA:   3'- -GGUCGg---AGGUCCUCCACuu---CCaAGUG- -5'
9070 3' -55.1 NC_002512.2 + 181264 0.68 0.90568
Target:  5'- aCCAGUC-CCAGGucGGUGu-GGcUCACg -3'
miRNA:   3'- -GGUCGGaGGUCCu-CCACuuCCaAGUG- -5'
9070 3' -55.1 NC_002512.2 + 95901 0.69 0.897586
Target:  5'- cCCGGCCgggugCCGacgaggaccucgauGGGGGUGAAGGgaCGg -3'
miRNA:   3'- -GGUCGGa----GGU--------------CCUCCACUUCCaaGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.