miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9070 5' -55.7 NC_002512.2 + 121691 0.66 0.967882
Target:  5'- aGGUGAgggaguggaaACGCC-UCGccACcGGGGCGa- -3'
miRNA:   3'- gCCACU----------UGCGGuAGU--UGaCCCCGCac -5'
9070 5' -55.7 NC_002512.2 + 201463 0.66 0.967882
Target:  5'- aGGUGGuCcCCGUCGGCcGGGGUGc- -3'
miRNA:   3'- gCCACUuGcGGUAGUUGaCCCCGCac -5'
9070 5' -55.7 NC_002512.2 + 94892 0.66 0.967882
Target:  5'- uCGGUccACGUCAgCAGCUcucGGGGCGa- -3'
miRNA:   3'- -GCCAcuUGCGGUaGUUGA---CCCCGCac -5'
9070 5' -55.7 NC_002512.2 + 4546 0.66 0.964791
Target:  5'- aCGGUGAggcgGCGCgAcCGACggcugcggcgucUGGGGCGg- -3'
miRNA:   3'- -GCCACU----UGCGgUaGUUG------------ACCCCGCac -5'
9070 5' -55.7 NC_002512.2 + 57425 0.66 0.964791
Target:  5'- aGGUG-ACGUUGUCGACcaGGGCGUc -3'
miRNA:   3'- gCCACuUGCGGUAGUUGacCCCGCAc -5'
9070 5' -55.7 NC_002512.2 + 11441 0.66 0.964791
Target:  5'- gCGG-GGACGCCGcgGACgGGGGCc-- -3'
miRNA:   3'- -GCCaCUUGCGGUagUUGaCCCCGcac -5'
9070 5' -55.7 NC_002512.2 + 51375 0.66 0.961497
Target:  5'- uGGcGGACGCCcUCAGagccCUGGaGGCGg- -3'
miRNA:   3'- gCCaCUUGCGGuAGUU----GACC-CCGCac -5'
9070 5' -55.7 NC_002512.2 + 75133 0.66 0.961496
Target:  5'- uGGUGGugGUCAcCGccACcgGGGGCGg- -3'
miRNA:   3'- gCCACUugCGGUaGU--UGa-CCCCGCac -5'
9070 5' -55.7 NC_002512.2 + 181412 0.66 0.960813
Target:  5'- cCGGggacgcguucagGAugGCCGUCAGCUGcGGGa--- -3'
miRNA:   3'- -GCCa-----------CUugCGGUAGUUGAC-CCCgcac -5'
9070 5' -55.7 NC_002512.2 + 97121 0.66 0.954281
Target:  5'- gGGUGAaccagucgACGCaggaCAUCAGCUGccuGGGCGa- -3'
miRNA:   3'- gCCACU--------UGCG----GUAGUUGAC---CCCGCac -5'
9070 5' -55.7 NC_002512.2 + 120767 0.67 0.946204
Target:  5'- aCGuGcUGGACucggcgGCCGUCGGCgGGGGCGg- -3'
miRNA:   3'- -GC-C-ACUUG------CGGUAGUUGaCCCCGCac -5'
9070 5' -55.7 NC_002512.2 + 17837 0.67 0.946204
Target:  5'- gGGUGuGCGCCAgCAGCUccucccGGGcGCGg- -3'
miRNA:   3'- gCCACuUGCGGUaGUUGA------CCC-CGCac -5'
9070 5' -55.7 NC_002512.2 + 101447 0.67 0.946203
Target:  5'- gCGGc-GACGCCGagAGCgGGGGgGUGg -3'
miRNA:   3'- -GCCacUUGCGGUagUUGaCCCCgCAC- -5'
9070 5' -55.7 NC_002512.2 + 166778 0.67 0.945347
Target:  5'- gGGUGGguuaucgccgGCGUCAUCGAaaucaagggugGGGGCGUc -3'
miRNA:   3'- gCCACU----------UGCGGUAGUUga---------CCCCGCAc -5'
9070 5' -55.7 NC_002512.2 + 50034 0.67 0.941833
Target:  5'- aCGGUGGGCGCgCA-CAcGCgGGGGCugGUGc -3'
miRNA:   3'- -GCCACUUGCG-GUaGU-UGaCCCCG--CAC- -5'
9070 5' -55.7 NC_002512.2 + 205644 0.67 0.941833
Target:  5'- gCGGgGGACGCCGUCGGC--GGGCc-- -3'
miRNA:   3'- -GCCaCUUGCGGUAGUUGacCCCGcac -5'
9070 5' -55.7 NC_002512.2 + 101899 0.67 0.941833
Target:  5'- gCGG-GGACGCCG---ACgGGGGCGg- -3'
miRNA:   3'- -GCCaCUUGCGGUaguUGaCCCCGCac -5'
9070 5' -55.7 NC_002512.2 + 134068 0.67 0.937239
Target:  5'- cCGGUGca-GCCAUCAccgGCUGcgcuGGGCGa- -3'
miRNA:   3'- -GCCACuugCGGUAGU---UGAC----CCCGCac -5'
9070 5' -55.7 NC_002512.2 + 196635 0.67 0.932419
Target:  5'- gGGUGGccgACGCCGUguGuCUGGGGgGc- -3'
miRNA:   3'- gCCACU---UGCGGUAguU-GACCCCgCac -5'
9070 5' -55.7 NC_002512.2 + 200274 0.67 0.932419
Target:  5'- aCGG-GGACgaggacgacgaGCCGUCgGACUGGGGCu-- -3'
miRNA:   3'- -GCCaCUUG-----------CGGUAG-UUGACCCCGcac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.