Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
9071 | 3' | -60.9 | NC_002512.2 | + | 81952 | 0.66 | 0.784124 |
Target: 5'- aGGGGCCGgcgCGCGGugaGCCcCgggcgGGUGGUg -3' miRNA: 3'- -UUCUGGCa--GCGCC---CGGaGa----CCACCAa -5' |
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9071 | 3' | -60.9 | NC_002512.2 | + | 31646 | 0.66 | 0.756216 |
Target: 5'- gGAGGCCGUCccggacggcgcggGCGcGGCCg-UGGUGGc- -3' miRNA: 3'- -UUCUGGCAG-------------CGC-CCGGagACCACCaa -5' |
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9071 | 3' | -60.9 | NC_002512.2 | + | 41536 | 0.66 | 0.747922 |
Target: 5'- gAAGGCCugguagagGUUGCGGGCCUgcacGGUGGc- -3' miRNA: 3'- -UUCUGG--------CAGCGCCCGGAga--CCACCaa -5' |
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9071 | 3' | -60.9 | NC_002512.2 | + | 95092 | 0.66 | 0.729229 |
Target: 5'- cGAGACCGgCGuCGGGCC-CggggacgcgGGUGGg- -3' miRNA: 3'- -UUCUGGCaGC-GCCCGGaGa--------CCACCaa -5' |
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9071 | 3' | -60.9 | NC_002512.2 | + | 81287 | 0.68 | 0.661798 |
Target: 5'- gGGGGCgGUC-CGGGCCUgCggGGUGGg- -3' miRNA: 3'- -UUCUGgCAGcGCCCGGA-Ga-CCACCaa -5' |
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9071 | 3' | -60.9 | NC_002512.2 | + | 90931 | 0.68 | 0.652016 |
Target: 5'- cGGGGCCGgCGCGGccgccGCCgUCgUGGUGGUg -3' miRNA: 3'- -UUCUGGCaGCGCC-----CGG-AG-ACCACCAa -5' |
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9071 | 3' | -60.9 | NC_002512.2 | + | 139801 | 0.68 | 0.62261 |
Target: 5'- cAGGCCGgCGgGGGCCUC-GGUcgGGUg -3' miRNA: 3'- uUCUGGCaGCgCCCGGAGaCCA--CCAa -5' |
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9071 | 3' | -60.9 | NC_002512.2 | + | 128854 | 0.68 | 0.62261 |
Target: 5'- cGGGcGCCG-CGCGGGCC-CUGGUGc-- -3' miRNA: 3'- -UUC-UGGCaGCGCCCGGaGACCACcaa -5' |
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9071 | 3' | -60.9 | NC_002512.2 | + | 201439 | 0.69 | 0.583525 |
Target: 5'- cGGGUCGUCGCGaucucGGCCUCgaGGUGGUc -3' miRNA: 3'- uUCUGGCAGCGC-----CCGGAGa-CCACCAa -5' |
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9071 | 3' | -60.9 | NC_002512.2 | + | 36411 | 0.76 | 0.254483 |
Target: 5'- cAGGCCGUCGUGGGCCUCgucccGGaGGg- -3' miRNA: 3'- uUCUGGCAGCGCCCGGAGa----CCaCCaa -5' |
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9071 | 3' | -60.9 | NC_002512.2 | + | 136887 | 1.02 | 0.003906 |
Target: 5'- gAAGACCGUCGCGGGCCUCUGGUGGUUc -3' miRNA: 3'- -UUCUGGCAGCGCCCGGAGACCACCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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