miRNA display CGI


Results 1 - 20 of 263 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9071 5' -53.1 NC_002512.2 + 102723 0.66 0.993129
Target:  5'- gGCGGCCuCGCG-GCAguCCCGgAUCACGa -3'
miRNA:   3'- -UGUUGGuGUGCaUGU--GGGUgUGGUGC- -5'
9071 5' -53.1 NC_002512.2 + 54816 0.66 0.993129
Target:  5'- uCAAgCAgAUGUGCACgUCGCACCcGCGg -3'
miRNA:   3'- uGUUgGUgUGCAUGUG-GGUGUGG-UGC- -5'
9071 5' -53.1 NC_002512.2 + 56062 0.66 0.993129
Target:  5'- -aAACCACAagagGUGCagACCCGCACgCAgGa -3'
miRNA:   3'- ugUUGGUGUg---CAUG--UGGGUGUG-GUgC- -5'
9071 5' -53.1 NC_002512.2 + 117823 0.66 0.993129
Target:  5'- uCAAgCACACGUGCGCgCugAUCGg- -3'
miRNA:   3'- uGUUgGUGUGCAUGUGgGugUGGUgc -5'
9071 5' -53.1 NC_002512.2 + 69740 0.66 0.993129
Target:  5'- -aGACUugACACGcgGCGCCCGgauCGCCACc -3'
miRNA:   3'- ugUUGG--UGUGCa-UGUGGGU---GUGGUGc -5'
9071 5' -53.1 NC_002512.2 + 105607 0.66 0.993129
Target:  5'- -gAGCCGCACGcccgGguCCgACGCCGCc -3'
miRNA:   3'- ugUUGGUGUGCa---UguGGgUGUGGUGc -5'
9071 5' -53.1 NC_002512.2 + 72869 0.66 0.993129
Target:  5'- aGCAACUcCGCGUcuUACUCACGCUGCu -3'
miRNA:   3'- -UGUUGGuGUGCAu-GUGGGUGUGGUGc -5'
9071 5' -53.1 NC_002512.2 + 72998 0.66 0.993129
Target:  5'- uGCGGCCAgCGggUGUGCAUCCGCACgAa- -3'
miRNA:   3'- -UGUUGGU-GU--GCAUGUGGGUGUGgUgc -5'
9071 5' -53.1 NC_002512.2 + 106410 0.66 0.993129
Target:  5'- -gGACC-CGCG-AgACgCACACCGCGu -3'
miRNA:   3'- ugUUGGuGUGCaUgUGgGUGUGGUGC- -5'
9071 5' -53.1 NC_002512.2 + 216250 0.66 0.993129
Target:  5'- gACggUCGucauCAgGUGCgccGCCCGCACCGCc -3'
miRNA:   3'- -UGuuGGU----GUgCAUG---UGGGUGUGGUGc -5'
9071 5' -53.1 NC_002512.2 + 10750 0.66 0.993129
Target:  5'- gACAGCagguagaGCGCGUcgucgGCCC-CGCCGCGg -3'
miRNA:   3'- -UGUUGg------UGUGCAug---UGGGuGUGGUGC- -5'
9071 5' -53.1 NC_002512.2 + 96477 0.66 0.993129
Target:  5'- -gGACCGCGCGgccgucuCGCCCu--CCAUGg -3'
miRNA:   3'- ugUUGGUGUGCau-----GUGGGuguGGUGC- -5'
9071 5' -53.1 NC_002512.2 + 95197 0.66 0.993129
Target:  5'- gGCAGCCcgGCGaGCGCCCGCuggugacggAUCGCGu -3'
miRNA:   3'- -UGUUGGugUGCaUGUGGGUG---------UGGUGC- -5'
9071 5' -53.1 NC_002512.2 + 179848 0.66 0.993129
Target:  5'- cCAGCCccCGCGUgugcGCGCCCACcguCACGa -3'
miRNA:   3'- uGUUGGu-GUGCA----UGUGGGUGug-GUGC- -5'
9071 5' -53.1 NC_002512.2 + 127181 0.66 0.993129
Target:  5'- gGCcGCCACuaACGUcACGCUCA-GCCACGu -3'
miRNA:   3'- -UGuUGGUG--UGCA-UGUGGGUgUGGUGC- -5'
9071 5' -53.1 NC_002512.2 + 111247 0.66 0.993034
Target:  5'- uCAGCCGCuguucgaACGUGCACa-GCACCGuCGu -3'
miRNA:   3'- uGUUGGUG-------UGCAUGUGggUGUGGU-GC- -5'
9071 5' -53.1 NC_002512.2 + 105560 0.66 0.992134
Target:  5'- uACAGCCGCA---GCACgUcCGCCGCGg -3'
miRNA:   3'- -UGUUGGUGUgcaUGUGgGuGUGGUGC- -5'
9071 5' -53.1 NC_002512.2 + 44543 0.66 0.992134
Target:  5'- gGCGAUgGCgGCGgcCACCCGgGCgGCGa -3'
miRNA:   3'- -UGUUGgUG-UGCauGUGGGUgUGgUGC- -5'
9071 5' -53.1 NC_002512.2 + 14937 0.66 0.992134
Target:  5'- -gGACC-C-CGUGCGUCCGCgGCCACGg -3'
miRNA:   3'- ugUUGGuGuGCAUGUGGGUG-UGGUGC- -5'
9071 5' -53.1 NC_002512.2 + 60373 0.66 0.992134
Target:  5'- -gAGCUggACGCGUACACCUACcugauCCuGCGg -3'
miRNA:   3'- ugUUGG--UGUGCAUGUGGGUGu----GG-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.