miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9072 3' -56.2 NC_002512.2 + 116532 0.66 0.954977
Target:  5'- --gGCCaagaCGUGCCagCUGCUGgggaugaACGGCCg -3'
miRNA:   3'- guaCGG----GCACGGg-GACGACa------UGUUGG- -5'
9072 3' -56.2 NC_002512.2 + 115774 0.66 0.954977
Target:  5'- gGUGgCCGUGCCgugcuaCUGCg--ACGACUg -3'
miRNA:   3'- gUACgGGCACGGg-----GACGacaUGUUGG- -5'
9072 3' -56.2 NC_002512.2 + 97690 0.66 0.954597
Target:  5'- aUcgGCCUGacggugcUGCUgCUGCUGUGCAucgGCUu -3'
miRNA:   3'- -GuaCGGGC-------ACGGgGACGACAUGU---UGG- -5'
9072 3' -56.2 NC_002512.2 + 183600 0.66 0.954214
Target:  5'- --cGCCCG-GCUcgacgugucucaucaCCUGCUccagcuggggcacucGUACAACCu -3'
miRNA:   3'- guaCGGGCaCGG---------------GGACGA---------------CAUGUUGG- -5'
9072 3' -56.2 NC_002512.2 + 227814 0.66 0.953442
Target:  5'- --cGCCCGgcguggacuccgcGCUCCcGCUGgcgccGCAGCCg -3'
miRNA:   3'- guaCGGGCa------------CGGGGaCGACa----UGUUGG- -5'
9072 3' -56.2 NC_002512.2 + 116664 0.66 0.951073
Target:  5'- cCGUGCCCGUcuCCCCggGCg--AgGACCc -3'
miRNA:   3'- -GUACGGGCAc-GGGGa-CGacaUgUUGG- -5'
9072 3' -56.2 NC_002512.2 + 105693 0.66 0.951073
Target:  5'- gGUGCCUcUGUCCCcgGCggacGaGCAGCCa -3'
miRNA:   3'- gUACGGGcACGGGGa-CGa---CaUGUUGG- -5'
9072 3' -56.2 NC_002512.2 + 214213 0.66 0.949039
Target:  5'- --cGCCCGcUGCCCCgggacgucaggcgGCUcGUcggcucgccgcccGCGGCCg -3'
miRNA:   3'- guaCGGGC-ACGGGGa------------CGA-CA-------------UGUUGG- -5'
9072 3' -56.2 NC_002512.2 + 164015 0.66 0.946949
Target:  5'- --cGCUCGaGCCCCUGgaGaAC-ACCg -3'
miRNA:   3'- guaCGGGCaCGGGGACgaCaUGuUGG- -5'
9072 3' -56.2 NC_002512.2 + 112770 0.66 0.946949
Target:  5'- --cGCCgCGggGCCCCgugccGCUGUGCcggguCCa -3'
miRNA:   3'- guaCGG-GCa-CGGGGa----CGACAUGuu---GG- -5'
9072 3' -56.2 NC_002512.2 + 165303 0.66 0.946949
Target:  5'- --cGCCgCGcGCCgCUcgucGCUGUGCGGCUa -3'
miRNA:   3'- guaCGG-GCaCGGgGA----CGACAUGUUGG- -5'
9072 3' -56.2 NC_002512.2 + 192746 0.66 0.946949
Target:  5'- --cGuCCUG-GCCuuCCUGCUGUACuucGCCu -3'
miRNA:   3'- guaC-GGGCaCGG--GGACGACAUGu--UGG- -5'
9072 3' -56.2 NC_002512.2 + 104737 0.66 0.946525
Target:  5'- --cGCCCGcccccgggGCCCCcgcgguucacgcgUGCUGcAUGACCa -3'
miRNA:   3'- guaCGGGCa-------CGGGG-------------ACGACaUGUUGG- -5'
9072 3' -56.2 NC_002512.2 + 146607 0.66 0.942603
Target:  5'- --gGCCCcagacGCCUCUGCUGccgACGAUCc -3'
miRNA:   3'- guaCGGGca---CGGGGACGACa--UGUUGG- -5'
9072 3' -56.2 NC_002512.2 + 126783 0.66 0.942603
Target:  5'- --aGCCUGUGUCagaacccgaCCUGCUucggcUGCGACCg -3'
miRNA:   3'- guaCGGGCACGG---------GGACGAc----AUGUUGG- -5'
9072 3' -56.2 NC_002512.2 + 115870 0.66 0.942603
Target:  5'- --cGCCCgGUGCCgCUGCggGgcCGACg -3'
miRNA:   3'- guaCGGG-CACGGgGACGa-CauGUUGg -5'
9072 3' -56.2 NC_002512.2 + 173717 0.66 0.93803
Target:  5'- -cUGCCCGcGaCCgUGCUcgGCAACCa -3'
miRNA:   3'- guACGGGCaCgGGgACGAcaUGUUGG- -5'
9072 3' -56.2 NC_002512.2 + 154264 0.66 0.935179
Target:  5'- gCGUGCgCGUGCCCgCgUGCgcGUGCGcagacgcgcgcgaaaGCCg -3'
miRNA:   3'- -GUACGgGCACGGG-G-ACGa-CAUGU---------------UGG- -5'
9072 3' -56.2 NC_002512.2 + 45346 0.66 0.933232
Target:  5'- gCcgGCCCGcGCCgCCgGCUGaccccGCGACUg -3'
miRNA:   3'- -GuaCGGGCaCGG-GGaCGACa----UGUUGG- -5'
9072 3' -56.2 NC_002512.2 + 223560 0.66 0.933232
Target:  5'- --cGCCCGgucCCCCcGCgGgcgGCGGCCa -3'
miRNA:   3'- guaCGGGCac-GGGGaCGaCa--UGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.