miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9072 5' -58.2 NC_002512.2 + 40917 0.66 0.917018
Target:  5'- cGGACCuGUaaaCGGGaaCGgGACGGGGGAg -3'
miRNA:   3'- aCCUGG-CAa--GUCCg-GCaCUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 82204 0.66 0.919192
Target:  5'- cGGGCCGgcguccUCccggggcgggaagcgGGGCCgGUGACGGuagcGGGAg -3'
miRNA:   3'- aCCUGGCa-----AG---------------UCCGG-CACUGCU----CCCU- -5'
9072 5' -58.2 NC_002512.2 + 105816 0.66 0.91086
Target:  5'- cGGAgaagcccCCGggCAgGGCCcaGACGAGGGu -3'
miRNA:   3'- aCCU-------GGCaaGU-CCGGcaCUGCUCCCu -5'
9072 5' -58.2 NC_002512.2 + 130156 0.66 0.900225
Target:  5'- gGGGcCCGgcggCGGGCCGgcccgcgacggcgcgGACGAGGa- -3'
miRNA:   3'- aCCU-GGCaa--GUCCGGCa--------------CUGCUCCcu -5'
9072 5' -58.2 NC_002512.2 + 86245 0.66 0.893389
Target:  5'- aGGAcCCGggggagaGGGCCGaGGCG-GGGAg -3'
miRNA:   3'- aCCU-GGCaag----UCCGGCaCUGCuCCCU- -5'
9072 5' -58.2 NC_002512.2 + 102363 0.66 0.905629
Target:  5'- cGGucguCCGgaggUCcuGGaGCCG-GACGAGGGGa -3'
miRNA:   3'- aCCu---GGCa---AG--UC-CGGCaCUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 7295 0.66 0.899614
Target:  5'- gGGGCCGgaCAGGCCuccuccgcGACGGcGGGc -3'
miRNA:   3'- aCCUGGCaaGUCCGGca------CUGCU-CCCu -5'
9072 5' -58.2 NC_002512.2 + 224154 0.66 0.899614
Target:  5'- cGGACgCGUg-AGGCgG-GGCGGGGGc -3'
miRNA:   3'- aCCUG-GCAagUCCGgCaCUGCUCCCu -5'
9072 5' -58.2 NC_002512.2 + 149518 0.66 0.899614
Target:  5'- cGcGGCCGgagCGGGCCGgccagGAgGAGGa- -3'
miRNA:   3'- aC-CUGGCaa-GUCCGGCa----CUgCUCCcu -5'
9072 5' -58.2 NC_002512.2 + 95692 0.66 0.893389
Target:  5'- cGGGCC--UCcGGCgGgGACGGGGGGc -3'
miRNA:   3'- aCCUGGcaAGuCCGgCaCUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 130168 0.66 0.917018
Target:  5'- aGGACgaaGUgCAGGgCGUagaaGACGAGGGc -3'
miRNA:   3'- aCCUGg--CAaGUCCgGCA----CUGCUCCCu -5'
9072 5' -58.2 NC_002512.2 + 166023 0.67 0.886955
Target:  5'- gGGACgCGUUCGgcGGCCGUucCGGGGu- -3'
miRNA:   3'- aCCUG-GCAAGU--CCGGCAcuGCUCCcu -5'
9072 5' -58.2 NC_002512.2 + 228871 0.67 0.886955
Target:  5'- aUGGAaucaCCGg--AGGCCG-GGCGAGuGGAu -3'
miRNA:   3'- -ACCU----GGCaagUCCGGCaCUGCUC-CCU- -5'
9072 5' -58.2 NC_002512.2 + 142267 0.67 0.851803
Target:  5'- cGGucgUCGUcCGGGCCGgggacggcgucGACGGGGGAu -3'
miRNA:   3'- aCCu--GGCAaGUCCGGCa----------CUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 7430 0.67 0.886955
Target:  5'- aGGGCCGgcgCGagguuGGCCGcGGCccGGGGGAa -3'
miRNA:   3'- aCCUGGCaa-GU-----CCGGCaCUG--CUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 95092 0.67 0.866443
Target:  5'- cGaGACCGgcgUCGGGCCcgggGACGcGGGu -3'
miRNA:   3'- aC-CUGGCa--AGUCCGGca--CUGCuCCCu -5'
9072 5' -58.2 NC_002512.2 + 81965 0.67 0.866443
Target:  5'- cGGugagccCCGggCGGGUgGUGGCGGcGGGGg -3'
miRNA:   3'- aCCu-----GGCaaGUCCGgCACUGCU-CCCU- -5'
9072 5' -58.2 NC_002512.2 + 121827 0.67 0.859216
Target:  5'- --cGCCG-UC-GGCCG-GACGGGGGGg -3'
miRNA:   3'- accUGGCaAGuCCGGCaCUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 97215 0.67 0.859216
Target:  5'- cGGGCCGggCGGGaCGUcgaGGCGcuGGGAg -3'
miRNA:   3'- aCCUGGCaaGUCCgGCA---CUGCu-CCCU- -5'
9072 5' -58.2 NC_002512.2 + 53869 0.67 0.851803
Target:  5'- gGGACCGUccguUCcccaGGGaCCGacgGACGAGGaGAu -3'
miRNA:   3'- aCCUGGCA----AG----UCC-GGCa--CUGCUCC-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.