miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9072 5' -58.2 NC_002512.2 + 136651 1.09 0.003277
Target:  5'- cUGGACCGUUCAGGCCGUGACGAGGGAg -3'
miRNA:   3'- -ACCUGGCAAGUCCGGCACUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 70692 0.79 0.275949
Target:  5'- gGGACCGgcCGGGCgGggGACGGGGGGa -3'
miRNA:   3'- aCCUGGCaaGUCCGgCa-CUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 9683 0.77 0.336318
Target:  5'- cGGGCCGccgUCGGGCCccGGCGGGGGu -3'
miRNA:   3'- aCCUGGCa--AGUCCGGcaCUGCUCCCu -5'
9072 5' -58.2 NC_002512.2 + 164231 0.76 0.381632
Target:  5'- aGGGCaucggcauggUGUUCGGcGCCGUGGCGGGGGc -3'
miRNA:   3'- aCCUG----------GCAAGUC-CGGCACUGCUCCCu -5'
9072 5' -58.2 NC_002512.2 + 227104 0.74 0.501832
Target:  5'- -cGGCCGggUCGGGCUcaGACGGGGGAg -3'
miRNA:   3'- acCUGGCa-AGUCCGGcaCUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 3381 0.74 0.511076
Target:  5'- aGGGCCGccagCAGGacCCGcGGCGAGGGGa -3'
miRNA:   3'- aCCUGGCaa--GUCC--GGCaCUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 226315 0.72 0.596861
Target:  5'- gGGGCCug-UGGGCCGUGGCucGGGAc -3'
miRNA:   3'- aCCUGGcaaGUCCGGCACUGcuCCCU- -5'
9072 5' -58.2 NC_002512.2 + 24682 0.72 0.606586
Target:  5'- cGGGCCGcUCGGGCgggggucuCGUcgaggacgcgGGCGAGGGAg -3'
miRNA:   3'- aCCUGGCaAGUCCG--------GCA----------CUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 90508 0.72 0.626082
Target:  5'- gGGGCCG---AGGCCGgcggcgGACGAcGGGAa -3'
miRNA:   3'- aCCUGGCaagUCCGGCa-----CUGCU-CCCU- -5'
9072 5' -58.2 NC_002512.2 + 75018 0.71 0.645594
Target:  5'- cGcACCGaUCgaGGGCCGggGACGAGGGGa -3'
miRNA:   3'- aCcUGGCaAG--UCCGGCa-CUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 97374 0.71 0.674771
Target:  5'- gGGACCGcggcGGCCGgaGACGGGGGc -3'
miRNA:   3'- aCCUGGCaaguCCGGCa-CUGCUCCCu -5'
9072 5' -58.2 NC_002512.2 + 100070 0.71 0.674771
Target:  5'- gGGGCCG--CGGGCCGggGACGgagcggucaGGGGAa -3'
miRNA:   3'- aCCUGGCaaGUCCGGCa-CUGC---------UCCCU- -5'
9072 5' -58.2 NC_002512.2 + 128196 0.7 0.703663
Target:  5'- cGGGCCGccggCGGGaCCGggGACG-GGGAc -3'
miRNA:   3'- aCCUGGCaa--GUCC-GGCa-CUGCuCCCU- -5'
9072 5' -58.2 NC_002512.2 + 155059 0.7 0.731124
Target:  5'- gGGucuCCGUUCgcgcgcgGGGUCGUGACGuucGGGGu -3'
miRNA:   3'- aCCu--GGCAAG-------UCCGGCACUGCu--CCCU- -5'
9072 5' -58.2 NC_002512.2 + 226746 0.7 0.73206
Target:  5'- gGGACCGggcUCcGGCCG-GACGAcGcGGAg -3'
miRNA:   3'- aCCUGGCa--AGuCCGGCaCUGCU-C-CCU- -5'
9072 5' -58.2 NC_002512.2 + 15802 0.7 0.73206
Target:  5'- aGaGGCgGUagAGGCCGccguggGACGAGGGGu -3'
miRNA:   3'- aC-CUGgCAagUCCGGCa-----CUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 135801 0.7 0.741379
Target:  5'- cGGACCGgccgccGCCGUcGCGGGGGGa -3'
miRNA:   3'- aCCUGGCaaguc-CGGCAcUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 102753 0.69 0.750611
Target:  5'- cGGACUGU--AGGCCGUGACGGc--- -3'
miRNA:   3'- aCCUGGCAagUCCGGCACUGCUcccu -5'
9072 5' -58.2 NC_002512.2 + 118101 0.69 0.759749
Target:  5'- gGcGACCGcgCGgaccGGCCGUaucgcuGACGGGGGAg -3'
miRNA:   3'- aC-CUGGCaaGU----CCGGCA------CUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 201694 0.69 0.759749
Target:  5'- gGGACCGg--AGGUgGUGugG-GGGAu -3'
miRNA:   3'- aCCUGGCaagUCCGgCACugCuCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.