miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9072 5' -58.2 NC_002512.2 + 122051 0.68 0.844208
Target:  5'- cGGGgCGgcgUCGgcGGCUGUGACGAcagcGGGGg -3'
miRNA:   3'- aCCUgGCa--AGU--CCGGCACUGCU----CCCU- -5'
9072 5' -58.2 NC_002512.2 + 120772 0.69 0.768784
Target:  5'- cUGGACuCGgc--GGCCGUcGGCGGGGGc -3'
miRNA:   3'- -ACCUG-GCaaguCCGGCA-CUGCUCCCu -5'
9072 5' -58.2 NC_002512.2 + 169322 0.69 0.786514
Target:  5'- gGGGCCugguauauaGUggGGGCCG-GACGuGGGAg -3'
miRNA:   3'- aCCUGG---------CAagUCCGGCaCUGCuCCCU- -5'
9072 5' -58.2 NC_002512.2 + 169424 0.69 0.786514
Target:  5'- gGGGCCugguauaugGUggGGGCCG-GACGuGGGAg -3'
miRNA:   3'- aCCUGG---------CAagUCCGGCaCUGCuCCCU- -5'
9072 5' -58.2 NC_002512.2 + 130677 0.68 0.80374
Target:  5'- aGGACCGggaCGGGCUGcucGugGuGGGGc -3'
miRNA:   3'- aCCUGGCaa-GUCCGGCa--CugCuCCCU- -5'
9072 5' -58.2 NC_002512.2 + 170382 0.68 0.809638
Target:  5'- gGGugUGUUCuucguccagcauccAGGCCGcucgagacccgcUGGCGAGGGc -3'
miRNA:   3'- aCCugGCAAG--------------UCCGGC------------ACUGCUCCCu -5'
9072 5' -58.2 NC_002512.2 + 111169 0.68 0.812144
Target:  5'- --uGCCGaUCAGGUgGUGGCGgcuGGGGAu -3'
miRNA:   3'- accUGGCaAGUCCGgCACUGC---UCCCU- -5'
9072 5' -58.2 NC_002512.2 + 115203 0.68 0.8204
Target:  5'- gUGGGCCGcgCAGGCCaggGACGucuucaGGAa -3'
miRNA:   3'- -ACCUGGCaaGUCCGGca-CUGCuc----CCU- -5'
9072 5' -58.2 NC_002512.2 + 7109 0.68 0.836439
Target:  5'- cUGGuccgcguaGCCGUgcUCGuuGGCCcaGACGAGGGAg -3'
miRNA:   3'- -ACC--------UGGCA--AGU--CCGGcaCUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 115767 0.69 0.767885
Target:  5'- cUGGACCGgu--GGCCGUgccgugcuacugcGACGAcuGGGAc -3'
miRNA:   3'- -ACCUGGCaaguCCGGCA-------------CUGCU--CCCU- -5'
9072 5' -58.2 NC_002512.2 + 118101 0.69 0.759749
Target:  5'- gGcGACCGcgCGgaccGGCCGUaucgcuGACGGGGGAg -3'
miRNA:   3'- aC-CUGGCaaGU----CCGGCA------CUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 201694 0.69 0.759749
Target:  5'- gGGACCGg--AGGUgGUGugG-GGGAu -3'
miRNA:   3'- aCCUGGCaagUCCGgCACugCuCCCU- -5'
9072 5' -58.2 NC_002512.2 + 9683 0.77 0.336318
Target:  5'- cGGGCCGccgUCGGGCCccGGCGGGGGu -3'
miRNA:   3'- aCCUGGCa--AGUCCGGcaCUGCUCCCu -5'
9072 5' -58.2 NC_002512.2 + 3381 0.74 0.511076
Target:  5'- aGGGCCGccagCAGGacCCGcGGCGAGGGGa -3'
miRNA:   3'- aCCUGGCaa--GUCC--GGCaCUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 24682 0.72 0.606586
Target:  5'- cGGGCCGcUCGGGCgggggucuCGUcgaggacgcgGGCGAGGGAg -3'
miRNA:   3'- aCCUGGCaAGUCCG--------GCA----------CUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 75018 0.71 0.645594
Target:  5'- cGcACCGaUCgaGGGCCGggGACGAGGGGa -3'
miRNA:   3'- aCcUGGCaAG--UCCGGCa-CUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 97374 0.71 0.674771
Target:  5'- gGGACCGcggcGGCCGgaGACGGGGGc -3'
miRNA:   3'- aCCUGGCaaguCCGGCa-CUGCUCCCu -5'
9072 5' -58.2 NC_002512.2 + 128196 0.7 0.703663
Target:  5'- cGGGCCGccggCGGGaCCGggGACG-GGGAc -3'
miRNA:   3'- aCCUGGCaa--GUCC-GGCa-CUGCuCCCU- -5'
9072 5' -58.2 NC_002512.2 + 15802 0.7 0.73206
Target:  5'- aGaGGCgGUagAGGCCGccguggGACGAGGGGu -3'
miRNA:   3'- aC-CUGgCAagUCCGGCa-----CUGCUCCCU- -5'
9072 5' -58.2 NC_002512.2 + 135801 0.7 0.741379
Target:  5'- cGGACCGgccgccGCCGUcGCGGGGGGa -3'
miRNA:   3'- aCCUGGCaaguc-CGGCAcUGCUCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.