miRNA display CGI


Results 61 - 80 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 143167 0.66 0.785692
Target:  5'- cGGUugGC-CGCccucUCGuaguGCGCGCCCUGCa -3'
miRNA:   3'- -CCA--CGuGCGca--AGC----CGCGCGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 133394 0.66 0.785692
Target:  5'- cGGUGCcCGUGggCGacGCcaugGCGCCCcGCGg -3'
miRNA:   3'- -CCACGuGCGCaaGC--CG----CGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 170372 0.66 0.785692
Target:  5'- aGG-GC-CGUGcgCGGCGcCGCgCUGCa -3'
miRNA:   3'- -CCaCGuGCGCaaGCCGC-GCGgGACGc -5'
9073 5' -60.9 NC_002512.2 + 34588 0.66 0.794225
Target:  5'- --aGCuCGCGcccUUCGGCGCcgGCCCccGCGg -3'
miRNA:   3'- ccaCGuGCGC---AAGCCGCG--CGGGa-CGC- -5'
9073 5' -60.9 NC_002512.2 + 186827 0.66 0.794225
Target:  5'- cGGUGC-C----UCGGCGagGCCCUGCGc -3'
miRNA:   3'- -CCACGuGcgcaAGCCGCg-CGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 218626 0.66 0.794225
Target:  5'- --aGgACGCGcgUCGGgacccuguCGCGCCCgGCGg -3'
miRNA:   3'- ccaCgUGCGCa-AGCC--------GCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 138954 0.66 0.794225
Target:  5'- --cGCACGCcc-CGGuCGCGCCCgucaGCa -3'
miRNA:   3'- ccaCGUGCGcaaGCC-GCGCGGGa---CGc -5'
9073 5' -60.9 NC_002512.2 + 118584 0.66 0.794225
Target:  5'- gGGaGC-CGCGaUCGGCG-GCCCUcuccccGCGg -3'
miRNA:   3'- -CCaCGuGCGCaAGCCGCgCGGGA------CGC- -5'
9073 5' -60.9 NC_002512.2 + 209768 0.66 0.794225
Target:  5'- --cGCucCGCGUcuuUCGGCaaGCCCgGCGg -3'
miRNA:   3'- ccaCGu-GCGCA---AGCCGcgCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 92139 0.66 0.794225
Target:  5'- -cUGCGgGCGcugCGGCGCGUgcaggaCCUGCc -3'
miRNA:   3'- ccACGUgCGCaa-GCCGCGCG------GGACGc -5'
9073 5' -60.9 NC_002512.2 + 117070 0.66 0.800122
Target:  5'- cGGaGCACGCGca-GGCGCuggaggugcgggccGCCCUGg- -3'
miRNA:   3'- -CCaCGUGCGCaagCCGCG--------------CGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 190950 0.66 0.800959
Target:  5'- gGGcGCACGCGggcgcccgccgCGGCG-GCCCcuccgGCGc -3'
miRNA:   3'- -CCaCGUGCGCaa---------GCCGCgCGGGa----CGC- -5'
9073 5' -60.9 NC_002512.2 + 204699 0.66 0.80263
Target:  5'- cGGcGgACGCGacgUCGGCGacggcggGCCCgggGCGg -3'
miRNA:   3'- -CCaCgUGCGCa--AGCCGCg------CGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 218885 0.66 0.80263
Target:  5'- cGUGCGCGCccUCaucGCGCGCCaCgcgggGCGg -3'
miRNA:   3'- cCACGUGCGcaAGc--CGCGCGG-Ga----CGC- -5'
9073 5' -60.9 NC_002512.2 + 88608 0.66 0.805954
Target:  5'- cGUGCGCGCGgccggcgUCGGgacgaacguggucguCGCGCUguucuUUGCGg -3'
miRNA:   3'- cCACGUGCGCa------AGCC---------------GCGCGG-----GACGC- -5'
9073 5' -60.9 NC_002512.2 + 147470 0.66 0.8109
Target:  5'- -cUGCugGUcUUCGcGCGgGCgCUGCGg -3'
miRNA:   3'- ccACGugCGcAAGC-CGCgCGgGACGC- -5'
9073 5' -60.9 NC_002512.2 + 145615 0.66 0.8109
Target:  5'- --gGCGgGCGUUCGGCccGCuGCCCgccuuccGCGu -3'
miRNA:   3'- ccaCGUgCGCAAGCCG--CG-CGGGa------CGC- -5'
9073 5' -60.9 NC_002512.2 + 47819 0.66 0.819027
Target:  5'- cGGaGC-CGCGgcugaggUCGGCGCGgcuggccgacaUCCUGCa -3'
miRNA:   3'- -CCaCGuGCGCa------AGCCGCGC-----------GGGACGc -5'
9073 5' -60.9 NC_002512.2 + 152455 0.66 0.819027
Target:  5'- cGG-GCGCGCGgcguugggaGGCGUcccggGUCCUGUGa -3'
miRNA:   3'- -CCaCGUGCGCaag------CCGCG-----CGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 136222 0.66 0.819027
Target:  5'- uGGUGCGCGgGggUCaGCGUGCUggGCu -3'
miRNA:   3'- -CCACGUGCgCa-AGcCGCGCGGgaCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.