miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 128301 0.68 0.685491
Target:  5'- gGGUGCACGCccgaGUcgCGGCaccUGCUCUGCu -3'
miRNA:   3'- -CCACGUGCG----CAa-GCCGc--GCGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 114798 0.68 0.685491
Target:  5'- -cUGCACGCGggUGGCcagGCGCCgC-GCGa -3'
miRNA:   3'- ccACGUGCGCaaGCCG---CGCGG-GaCGC- -5'
9073 5' -60.9 NC_002512.2 + 92970 0.68 0.685491
Target:  5'- gGGUGUACGUGUgguugugaUCGGCGaaccaccagagGCCC-GCGa -3'
miRNA:   3'- -CCACGUGCGCA--------AGCCGCg----------CGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 4446 0.68 0.685491
Target:  5'- gGGUGCcggGCGCGggggUCGGCGUcgGCCCc--- -3'
miRNA:   3'- -CCACG---UGCGCa---AGCCGCG--CGGGacgc -5'
9073 5' -60.9 NC_002512.2 + 45069 0.68 0.676001
Target:  5'- aGGUGU-CGCGgcCGGCGCGgaagggucuCCCcGCGg -3'
miRNA:   3'- -CCACGuGCGCaaGCCGCGC---------GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 29886 0.69 0.651197
Target:  5'- cGGUGCACGUGggCcgcucguccccgccgGGCGCGCggaCgcgGCGg -3'
miRNA:   3'- -CCACGUGCGCaaG---------------CCGCGCGg--Ga--CGC- -5'
9073 5' -60.9 NC_002512.2 + 124872 0.69 0.64737
Target:  5'- -cUGCGCGgGgcUCGaCGCGCCCgUGCGg -3'
miRNA:   3'- ccACGUGCgCa-AGCcGCGCGGG-ACGC- -5'
9073 5' -60.9 NC_002512.2 + 50017 0.69 0.628218
Target:  5'- cGGUGCACGuCGUcgugacggUgGGCGCGCacacGCGg -3'
miRNA:   3'- -CCACGUGC-GCA--------AgCCGCGCGgga-CGC- -5'
9073 5' -60.9 NC_002512.2 + 145615 0.66 0.8109
Target:  5'- --gGCGgGCGUUCGGCccGCuGCCCgccuuccGCGu -3'
miRNA:   3'- ccaCGUgCGCAAGCCG--CG-CGGGa------CGC- -5'
9073 5' -60.9 NC_002512.2 + 218885 0.66 0.80263
Target:  5'- cGUGCGCGCccUCaucGCGCGCCaCgcgggGCGg -3'
miRNA:   3'- cCACGUGCGcaAGc--CGCGCGG-Ga----CGC- -5'
9073 5' -60.9 NC_002512.2 + 204699 0.66 0.80263
Target:  5'- cGGcGgACGCGacgUCGGCGacggcggGCCCgggGCGg -3'
miRNA:   3'- -CCaCgUGCGCa--AGCCGCg------CGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 190950 0.66 0.800959
Target:  5'- gGGcGCACGCGggcgcccgccgCGGCG-GCCCcuccgGCGc -3'
miRNA:   3'- -CCaCGUGCGCaa---------GCCGCgCGGGa----CGC- -5'
9073 5' -60.9 NC_002512.2 + 117070 0.66 0.800122
Target:  5'- cGGaGCACGCGca-GGCGCuggaggugcgggccGCCCUGg- -3'
miRNA:   3'- -CCaCGUGCGCaagCCGCG--------------CGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 211351 0.66 0.825423
Target:  5'- gGGgacGCGCGCGgccugaccgccCGGCGCGgCaugCUGCGg -3'
miRNA:   3'- -CCa--CGUGCGCaa---------GCCGCGCgG---GACGC- -5'
9073 5' -60.9 NC_002512.2 + 90945 0.66 0.826215
Target:  5'- cGGgGCGUGCGUg-GGCGCGacgauccaccagaUCCUGCGg -3'
miRNA:   3'- -CCaCGUGCGCAagCCGCGC-------------GGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 165492 0.66 0.827006
Target:  5'- gGGUgGCuGCGCGUggGGCGCuucuCCCgGCGc -3'
miRNA:   3'- -CCA-CG-UGCGCAagCCGCGc---GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 223533 0.66 0.827006
Target:  5'- --gGCACGCGcccgCGGCccGCGgCCCcGCGc -3'
miRNA:   3'- ccaCGUGCGCaa--GCCG--CGC-GGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 171676 0.66 0.827006
Target:  5'- --cGCGCGCGg--GGUGCGCgCC-GCGc -3'
miRNA:   3'- ccaCGUGCGCaagCCGCGCG-GGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 181005 0.66 0.827006
Target:  5'- cGUGUugGUGUUCGuGUagagggaggcccGCGUCCUGgGc -3'
miRNA:   3'- cCACGugCGCAAGC-CG------------CGCGGGACgC- -5'
9073 5' -60.9 NC_002512.2 + 136494 1.11 0.001363
Target:  5'- aGGUGCACGCGUUCGGCGCGCCCUGCGg -3'
miRNA:   3'- -CCACGUGCGCAAGCCGCGCGGGACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.