miRNA display CGI


Results 41 - 60 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 92139 0.66 0.794225
Target:  5'- -cUGCGgGCGcugCGGCGCGUgcaggaCCUGCc -3'
miRNA:   3'- ccACGUgCGCaa-GCCGCGCG------GGACGc -5'
9073 5' -60.9 NC_002512.2 + 174210 0.68 0.676001
Target:  5'- --aGCgGCGCGUUCaGCGCcccGCCCgGCGu -3'
miRNA:   3'- ccaCG-UGCGCAAGcCGCG---CGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 169519 0.68 0.692111
Target:  5'- aGGUGUACGCGUccagcucgaacgggUccCGGC-UGCCCgGCGg -3'
miRNA:   3'- -CCACGUGCGCA--------------A--GCCGcGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 99894 0.73 0.444465
Target:  5'- cGG-GCACGCGgcgccgcCGGCGCuCCCgGCGg -3'
miRNA:   3'- -CCaCGUGCGCaa-----GCCGCGcGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 187170 0.7 0.580492
Target:  5'- uGGUGgACGUGgcccgccaucUUCGGCGUGCCg-GCGc -3'
miRNA:   3'- -CCACgUGCGC----------AAGCCGCGCGGgaCGC- -5'
9073 5' -60.9 NC_002512.2 + 105179 0.71 0.542856
Target:  5'- aGGUGCACGCGccccaggaCGGCguGCGCCCg--- -3'
miRNA:   3'- -CCACGUGCGCaa------GCCG--CGCGGGacgc -5'
9073 5' -60.9 NC_002512.2 + 121076 0.67 0.76827
Target:  5'- --cGCACGCcucgCGGaacaGCGCCCgcaGCGg -3'
miRNA:   3'- ccaCGUGCGcaa-GCCg---CGCGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 137199 0.73 0.444465
Target:  5'- cGGUcCGCccgGUGggCGGCGCGCCCgGCGc -3'
miRNA:   3'- -CCAcGUG---CGCaaGCCGCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 119376 0.7 0.580492
Target:  5'- uGGUGgACGacg-CGGCG-GCCCUGCu -3'
miRNA:   3'- -CCACgUGCgcaaGCCGCgCGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 108991 0.69 0.618643
Target:  5'- cGUGUACcugcucgucgGCGccggCGGCGuCGUCCUGCGg -3'
miRNA:   3'- cCACGUG----------CGCaa--GCCGC-GCGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 22949 0.67 0.759397
Target:  5'- aGG-GCACGCGg-CGGUGUGCCa-GCc -3'
miRNA:   3'- -CCaCGUGCGCaaGCCGCGCGGgaCGc -5'
9073 5' -60.9 NC_002512.2 + 124644 0.67 0.741361
Target:  5'- gGGUGCGCG-GcgCGGCGCucacgcuguacGCCUUcGCGc -3'
miRNA:   3'- -CCACGUGCgCaaGCCGCG-----------CGGGA-CGC- -5'
9073 5' -60.9 NC_002512.2 + 99617 0.67 0.741361
Target:  5'- cGUGUACGUGaugcCGGC-CGCCCUGa- -3'
miRNA:   3'- cCACGUGCGCaa--GCCGcGCGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 80814 0.67 0.741361
Target:  5'- --cGCGCGCGccUCGGCGUcggcggagggGCCCcguagGCGa -3'
miRNA:   3'- ccaCGUGCGCa-AGCCGCG----------CGGGa----CGC- -5'
9073 5' -60.9 NC_002512.2 + 125207 0.67 0.738626
Target:  5'- cGGUcGCGCGUGUcgucgUCGGUccggucuuuauuucGCGCCCUcguucGCGc -3'
miRNA:   3'- -CCA-CGUGCGCA-----AGCCG--------------CGCGGGA-----CGC- -5'
9073 5' -60.9 NC_002512.2 + 54613 0.67 0.735883
Target:  5'- cGUGUACGCGgcCGccagcuacccgccgaGCGCGgCCCUGgCGa -3'
miRNA:   3'- cCACGUGCGCaaGC---------------CGCGC-GGGAC-GC- -5'
9073 5' -60.9 NC_002512.2 + 124872 0.69 0.64737
Target:  5'- -cUGCGCGgGgcUCGaCGCGCCCgUGCGg -3'
miRNA:   3'- ccACGUGCgCa-AGCcGCGCGGG-ACGC- -5'
9073 5' -60.9 NC_002512.2 + 50017 0.69 0.628218
Target:  5'- cGGUGCACGuCGUcgugacggUgGGCGCGCacacGCGg -3'
miRNA:   3'- -CCACGUGC-GCA--------AgCCGCGCGgga-CGC- -5'
9073 5' -60.9 NC_002512.2 + 103536 0.69 0.626302
Target:  5'- cGUGaACGCG-UCGuGCGCGCCCgucccggacgcgGCGg -3'
miRNA:   3'- cCACgUGCGCaAGC-CGCGCGGGa-----------CGC- -5'
9073 5' -60.9 NC_002512.2 + 93420 0.66 0.83483
Target:  5'- uGGUGUuCGCGUcguacUCGGCGCggauguagugGCCCcGgGu -3'
miRNA:   3'- -CCACGuGCGCA-----AGCCGCG----------CGGGaCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.