miRNA display CGI


Results 61 - 80 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 119376 0.7 0.580492
Target:  5'- uGGUGgACGacg-CGGCG-GCCCUGCu -3'
miRNA:   3'- -CCACgUGCgcaaGCCGCgCGGGACGc -5'
9073 5' -60.9 NC_002512.2 + 105179 0.71 0.542856
Target:  5'- aGGUGCACGCGccccaggaCGGCguGCGCCCg--- -3'
miRNA:   3'- -CCACGUGCGCaa------GCCG--CGCGGGacgc -5'
9073 5' -60.9 NC_002512.2 + 108322 0.71 0.506059
Target:  5'- uGGcgGCGCGCGgcgggcggUCGGCGCGgCaUGCGc -3'
miRNA:   3'- -CCa-CGUGCGCa-------AGCCGCGCgGgACGC- -5'
9073 5' -60.9 NC_002512.2 + 125207 0.67 0.738626
Target:  5'- cGGUcGCGCGUGUcgucgUCGGUccggucuuuauuucGCGCCCUcguucGCGc -3'
miRNA:   3'- -CCA-CGUGCGCA-----AGCCG--------------CGCGGGA-----CGC- -5'
9073 5' -60.9 NC_002512.2 + 80814 0.67 0.741361
Target:  5'- --cGCGCGCGccUCGGCGUcggcggagggGCCCcguagGCGa -3'
miRNA:   3'- ccaCGUGCGCa-AGCCGCG----------CGGGa----CGC- -5'
9073 5' -60.9 NC_002512.2 + 99617 0.67 0.741361
Target:  5'- cGUGUACGUGaugcCGGC-CGCCCUGa- -3'
miRNA:   3'- cCACGUGCGCaa--GCCGcGCGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 75632 0.66 0.827006
Target:  5'- cGG-GCACGCGcacgCGG-GCGCUC-GCGc -3'
miRNA:   3'- -CCaCGUGCGCaa--GCCgCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 6344 0.66 0.819027
Target:  5'- cGG-GCGCGgGgcCGGCGgGCCgCggGCGc -3'
miRNA:   3'- -CCaCGUGCgCaaGCCGCgCGG-Ga-CGC- -5'
9073 5' -60.9 NC_002512.2 + 152455 0.66 0.819027
Target:  5'- cGG-GCGCGCGgcguugggaGGCGUcccggGUCCUGUGa -3'
miRNA:   3'- -CCaCGUGCGCaag------CCGCG-----CGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 101603 0.66 0.819027
Target:  5'- cGUGCGgGCGgccgUCGGCccgGCGCCgggacGCGa -3'
miRNA:   3'- cCACGUgCGCa---AGCCG---CGCGGga---CGC- -5'
9073 5' -60.9 NC_002512.2 + 47819 0.66 0.819027
Target:  5'- cGGaGC-CGCGgcugaggUCGGCGCGgcuggccgacaUCCUGCa -3'
miRNA:   3'- -CCaCGuGCGCa------AGCCGCGC-----------GGGACGc -5'
9073 5' -60.9 NC_002512.2 + 136222 0.66 0.819027
Target:  5'- uGGUGCGCGgGggUCaGCGUGCUggGCu -3'
miRNA:   3'- -CCACGUGCgCa-AGcCGCGCGGgaCGc -5'
9073 5' -60.9 NC_002512.2 + 116880 0.66 0.819027
Target:  5'- uGUGguCGCGgcuggCGGCGgGgCCgggGCGg -3'
miRNA:   3'- cCACguGCGCaa---GCCGCgCgGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 147470 0.66 0.8109
Target:  5'- -cUGCugGUcUUCGcGCGgGCgCUGCGg -3'
miRNA:   3'- ccACGugCGcAAGC-CGCgCGgGACGC- -5'
9073 5' -60.9 NC_002512.2 + 88608 0.66 0.805954
Target:  5'- cGUGCGCGCGgccggcgUCGGgacgaacguggucguCGCGCUguucuUUGCGg -3'
miRNA:   3'- cCACGUGCGCa------AGCC---------------GCGCGG-----GACGC- -5'
9073 5' -60.9 NC_002512.2 + 138954 0.66 0.794225
Target:  5'- --cGCACGCcc-CGGuCGCGCCCgucaGCa -3'
miRNA:   3'- ccaCGUGCGcaaGCC-GCGCGGGa---CGc -5'
9073 5' -60.9 NC_002512.2 + 34588 0.66 0.794225
Target:  5'- --aGCuCGCGcccUUCGGCGCcgGCCCccGCGg -3'
miRNA:   3'- ccaCGuGCGC---AAGCCGCG--CGGGa-CGC- -5'
9073 5' -60.9 NC_002512.2 + 22949 0.67 0.759397
Target:  5'- aGG-GCACGCGg-CGGUGUGCCa-GCc -3'
miRNA:   3'- -CCaCGUGCGCaaGCCGCGCGGgaCGc -5'
9073 5' -60.9 NC_002512.2 + 90098 0.67 0.750424
Target:  5'- cGUGUGCGUGUaugucuucuggaUCGcGgGCGCCCggUGCGc -3'
miRNA:   3'- cCACGUGCGCA------------AGC-CgCGCGGG--ACGC- -5'
9073 5' -60.9 NC_002512.2 + 124644 0.67 0.741361
Target:  5'- gGGUGCGCG-GcgCGGCGCucacgcuguacGCCUUcGCGc -3'
miRNA:   3'- -CCACGUGCgCaaGCCGCG-----------CGGGA-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.