miRNA display CGI


Results 81 - 93 of 93 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9073 5' -60.9 NC_002512.2 + 75632 0.66 0.827006
Target:  5'- cGG-GCACGCGcacgCGG-GCGCUC-GCGc -3'
miRNA:   3'- -CCaCGUGCGCaa--GCCgCGCGGGaCGC- -5'
9073 5' -60.9 NC_002512.2 + 138954 0.66 0.794225
Target:  5'- --cGCACGCcc-CGGuCGCGCCCgucaGCa -3'
miRNA:   3'- ccaCGUGCGcaaGCC-GCGCGGGa---CGc -5'
9073 5' -60.9 NC_002512.2 + 77468 0.67 0.76827
Target:  5'- cGGUGUGCGCaaugacgCaGCGauCGCCCUGUGg -3'
miRNA:   3'- -CCACGUGCGcaa----GcCGC--GCGGGACGC- -5'
9073 5' -60.9 NC_002512.2 + 80814 0.67 0.741361
Target:  5'- --cGCGCGCGccUCGGCGUcggcggagggGCCCcguagGCGa -3'
miRNA:   3'- ccaCGUGCGCa-AGCCGCG----------CGGGa----CGC- -5'
9073 5' -60.9 NC_002512.2 + 99617 0.67 0.741361
Target:  5'- cGUGUACGUGaugcCGGC-CGCCCUGa- -3'
miRNA:   3'- cCACGUGCGCaa--GCCGcGCGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 124644 0.67 0.741361
Target:  5'- gGGUGCGCG-GcgCGGCGCucacgcuguacGCCUUcGCGc -3'
miRNA:   3'- -CCACGUGCgCaaGCCGCG-----------CGGGA-CGC- -5'
9073 5' -60.9 NC_002512.2 + 90098 0.67 0.750424
Target:  5'- cGUGUGCGUGUaugucuucuggaUCGcGgGCGCCCggUGCGc -3'
miRNA:   3'- cCACGUGCGCA------------AGC-CgCGCGGG--ACGC- -5'
9073 5' -60.9 NC_002512.2 + 22949 0.67 0.759397
Target:  5'- aGG-GCACGCGg-CGGUGUGCCa-GCc -3'
miRNA:   3'- -CCaCGUGCGCaaGCCGCGCGGgaCGc -5'
9073 5' -60.9 NC_002512.2 + 121076 0.67 0.76827
Target:  5'- --cGCACGCcucgCGGaacaGCGCCCgcaGCGg -3'
miRNA:   3'- ccaCGUGCGcaa-GCCg---CGCGGGa--CGC- -5'
9073 5' -60.9 NC_002512.2 + 135092 0.67 0.76827
Target:  5'- --cGCGucuacCGCG-UCGuGCGCGCCCUGg- -3'
miRNA:   3'- ccaCGU-----GCGCaAGC-CGCGCGGGACgc -5'
9073 5' -60.9 NC_002512.2 + 137096 0.67 0.76827
Target:  5'- cGGUGUGCGCcca-GGCGCGCggggUGCGa -3'
miRNA:   3'- -CCACGUGCGcaagCCGCGCGgg--ACGC- -5'
9073 5' -60.9 NC_002512.2 + 11013 0.67 0.76827
Target:  5'- aGG-GCGCGCacggcgUCGGUGC-CCCggGCGa -3'
miRNA:   3'- -CCaCGUGCGca----AGCCGCGcGGGa-CGC- -5'
9073 5' -60.9 NC_002512.2 + 67731 0.66 0.83483
Target:  5'- --cGCuuuCGCGgUCGGCGUGCcggCCUcGCGa -3'
miRNA:   3'- ccaCGu--GCGCaAGCCGCGCG---GGA-CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.