miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9074 3' -48.3 NC_002512.2 + 141536 0.66 0.999946
Target:  5'- cGAACACucGAACGUGGAGACGuuCGCGc -3'
miRNA:   3'- uCUUGUG--UUUGUGUCUCUGCcuGUGU- -5'
9074 3' -48.3 NC_002512.2 + 41333 0.66 0.999946
Target:  5'- cGAACAC-GAC-CGGAuccGACGGACGa- -3'
miRNA:   3'- uCUUGUGuUUGuGUCU---CUGCCUGUgu -5'
9074 3' -48.3 NC_002512.2 + 11061 0.66 0.999946
Target:  5'- cAGAGCAgGGcCGCGGAGggcgagacggaGCGGACGg- -3'
miRNA:   3'- -UCUUGUgUUuGUGUCUC-----------UGCCUGUgu -5'
9074 3' -48.3 NC_002512.2 + 3604 0.66 0.999946
Target:  5'- cGGGgACAGGCGCAGAGcccGCGGuCGu- -3'
miRNA:   3'- uCUUgUGUUUGUGUCUC---UGCCuGUgu -5'
9074 3' -48.3 NC_002512.2 + 142413 0.66 0.999946
Target:  5'- -cAACACAggugAGCACAGAGA-GG-CGCGu -3'
miRNA:   3'- ucUUGUGU----UUGUGUCUCUgCCuGUGU- -5'
9074 3' -48.3 NC_002512.2 + 8698 0.66 0.999946
Target:  5'- gGGAGCACAAA-ACA---GCGGACGCc -3'
miRNA:   3'- -UCUUGUGUUUgUGUcucUGCCUGUGu -5'
9074 3' -48.3 NC_002512.2 + 152355 0.66 0.999946
Target:  5'- cGGACcucCGAGCACGGAGACcGGC-CGu -3'
miRNA:   3'- uCUUGu--GUUUGUGUCUCUGcCUGuGU- -5'
9074 3' -48.3 NC_002512.2 + 13710 0.66 0.999944
Target:  5'- cGGGCGCGaucccgaGACGCGGGagccuGAgGGGCGCGa -3'
miRNA:   3'- uCUUGUGU-------UUGUGUCU-----CUgCCUGUGU- -5'
9074 3' -48.3 NC_002512.2 + 95005 0.66 0.999944
Target:  5'- gAGGACGCGucgcgucguccggGGCAgGGGGGCGGuCAg- -3'
miRNA:   3'- -UCUUGUGU-------------UUGUgUCUCUGCCuGUgu -5'
9074 3' -48.3 NC_002512.2 + 189944 0.66 0.999944
Target:  5'- -cGACGCuu-CACGGgauucccGGACGGAUACGg -3'
miRNA:   3'- ucUUGUGuuuGUGUC-------UCUGCCUGUGU- -5'
9074 3' -48.3 NC_002512.2 + 199798 0.66 0.999944
Target:  5'- cGGGACAgGGAuguuuacCGCGGGGGCGGAUc-- -3'
miRNA:   3'- -UCUUGUgUUU-------GUGUCUCUGCCUGugu -5'
9074 3' -48.3 NC_002512.2 + 206188 0.66 0.999944
Target:  5'- uGGGGCACGGACAcCAGGaagcagcGGCGGuGCugGg -3'
miRNA:   3'- -UCUUGUGUUUGU-GUCU-------CUGCC-UGugU- -5'
9074 3' -48.3 NC_002512.2 + 64792 0.66 0.999928
Target:  5'- gAGAuguGCugGcGC-CAGcGACGGGCACGu -3'
miRNA:   3'- -UCU---UGugUuUGuGUCuCUGCCUGUGU- -5'
9074 3' -48.3 NC_002512.2 + 47511 0.66 0.999928
Target:  5'- cAGGACGCAGAC-CAccgacauccacGAGAuccagcagcCGGGCGCGg -3'
miRNA:   3'- -UCUUGUGUUUGuGU-----------CUCU---------GCCUGUGU- -5'
9074 3' -48.3 NC_002512.2 + 101652 0.66 0.999928
Target:  5'- gGGAGCGCG---GCGGccGCGGACGCc -3'
miRNA:   3'- -UCUUGUGUuugUGUCucUGCCUGUGu -5'
9074 3' -48.3 NC_002512.2 + 144085 0.66 0.999928
Target:  5'- cGGGCAgCAGGCGCAauaaauGACGGACGa- -3'
miRNA:   3'- uCUUGU-GUUUGUGUcu----CUGCCUGUgu -5'
9074 3' -48.3 NC_002512.2 + 228935 0.66 0.999928
Target:  5'- aAGAGagACAGACGgAGGGGgGGAgACGg -3'
miRNA:   3'- -UCUUg-UGUUUGUgUCUCUgCCUgUGU- -5'
9074 3' -48.3 NC_002512.2 + 86853 0.66 0.999928
Target:  5'- aGGAacugGCGCGGGCGCAGcuGA-GGGCGCu -3'
miRNA:   3'- -UCU----UGUGUUUGUGUCu-CUgCCUGUGu -5'
9074 3' -48.3 NC_002512.2 + 153648 0.66 0.999928
Target:  5'- gGGAGCGgGGGCACGcuccucacccucGuGGCGGACAg- -3'
miRNA:   3'- -UCUUGUgUUUGUGU------------CuCUGCCUGUgu -5'
9074 3' -48.3 NC_002512.2 + 115709 0.66 0.999928
Target:  5'- gAGAACAagauCAAGCuguCGGAGGCGGccgagacgACGCu -3'
miRNA:   3'- -UCUUGU----GUUUGu--GUCUCUGCC--------UGUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.