miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9074 5' -58.9 NC_002512.2 + 99789 0.68 0.764579
Target:  5'- gGCGCGCCCuUCacuCGGCCG-UCg- -3'
miRNA:   3'- gUGCGCGGGcAGguuGCCGGCaAGaa -5'
9074 5' -58.9 NC_002512.2 + 69139 0.7 0.669702
Target:  5'- -cCGUGCCCGgggCCGGCG-CCGUUCc- -3'
miRNA:   3'- guGCGCGGGCa--GGUUGCcGGCAAGaa -5'
9074 5' -58.9 NC_002512.2 + 46988 0.7 0.679446
Target:  5'- -uCGCGCCCG-CCGAgaggGGCCGcUUCUUg -3'
miRNA:   3'- guGCGCGGGCaGGUUg---CCGGC-AAGAA- -5'
9074 5' -58.9 NC_002512.2 + 113311 0.7 0.679446
Target:  5'- uCACGUaggccaggagggGCUCGUCgCAcagGCGGCCGUUCa- -3'
miRNA:   3'- -GUGCG------------CGGGCAG-GU---UGCCGGCAAGaa -5'
9074 5' -58.9 NC_002512.2 + 122874 0.7 0.679446
Target:  5'- aGCGCGCCCGgCUcuCGGCCGa---- -3'
miRNA:   3'- gUGCGCGGGCaGGuuGCCGGCaagaa -5'
9074 5' -58.9 NC_002512.2 + 126564 0.69 0.727472
Target:  5'- cUACGcCGCCCGggCCu-CGGCCGUcCUg -3'
miRNA:   3'- -GUGC-GCGGGCa-GGuuGCCGGCAaGAa -5'
9074 5' -58.9 NC_002512.2 + 113117 0.68 0.74621
Target:  5'- cCGC-CGCCCGUCCAcgaacaGCGGCuCGgcCUg -3'
miRNA:   3'- -GUGcGCGGGCAGGU------UGCCG-GCaaGAa -5'
9074 5' -58.9 NC_002512.2 + 58746 0.68 0.755445
Target:  5'- uCGCGCGCUCaGUCgGACacgucucGCCGUUCUa -3'
miRNA:   3'- -GUGCGCGGG-CAGgUUGc------CGGCAAGAa -5'
9074 5' -58.9 NC_002512.2 + 58986 0.68 0.755445
Target:  5'- aGCGCaGCgUGUCCAgGCGGCCG-UCg- -3'
miRNA:   3'- gUGCG-CGgGCAGGU-UGCCGGCaAGaa -5'
9074 5' -58.9 NC_002512.2 + 112017 0.7 0.65993
Target:  5'- --gGCGUCCGUCUuGCGGCCGaacgUCa- -3'
miRNA:   3'- gugCGCGGGCAGGuUGCCGGCa---AGaa -5'
9074 5' -58.9 NC_002512.2 + 131722 0.7 0.650138
Target:  5'- -cCGCGCCCGUCCAgacGCGGCg------ -3'
miRNA:   3'- guGCGCGGGCAGGU---UGCCGgcaagaa -5'
9074 5' -58.9 NC_002512.2 + 97193 0.7 0.650138
Target:  5'- cCACGaCGCCCGUCUgcggcGGCGGgCCGggCg- -3'
miRNA:   3'- -GUGC-GCGGGCAGG-----UUGCC-GGCaaGaa -5'
9074 5' -58.9 NC_002512.2 + 103549 0.76 0.323223
Target:  5'- uGCGCGCCCGUCCcggacgcGGCGGCCucgUCg- -3'
miRNA:   3'- gUGCGCGGGCAGG-------UUGCCGGca-AGaa -5'
9074 5' -58.9 NC_002512.2 + 137799 0.76 0.345619
Target:  5'- gGCGgGCCgcgCGUCCGGCGGCCGUccgUCUc -3'
miRNA:   3'- gUGCgCGG---GCAGGUUGCCGGCA---AGAa -5'
9074 5' -58.9 NC_002512.2 + 70740 0.75 0.384035
Target:  5'- aGCGCGCCCGgCCGccucacuuggaGCGGCCGcgCUUc -3'
miRNA:   3'- gUGCGCGGGCaGGU-----------UGCCGGCaaGAA- -5'
9074 5' -58.9 NC_002512.2 + 134121 0.75 0.384035
Target:  5'- gACGCcCCCGUCCAgGCGGCCG-UCg- -3'
miRNA:   3'- gUGCGcGGGCAGGU-UGCCGGCaAGaa -5'
9074 5' -58.9 NC_002512.2 + 141994 0.75 0.400174
Target:  5'- uCACGCGUuuGggcgaUCCGGCGGCCGUcUCUUc -3'
miRNA:   3'- -GUGCGCGggC-----AGGUUGCCGGCA-AGAA- -5'
9074 5' -58.9 NC_002512.2 + 137247 0.71 0.60112
Target:  5'- cCGCGCGgguCCCGgcgCCGGCGGCCGccgUCc- -3'
miRNA:   3'- -GUGCGC---GGGCa--GGUUGCCGGCa--AGaa -5'
9074 5' -58.9 NC_002512.2 + 8123 0.71 0.610908
Target:  5'- aCACGaCGgCCGcCCAGCuGCCGUUCg- -3'
miRNA:   3'- -GUGC-GCgGGCaGGUUGcCGGCAAGaa -5'
9074 5' -58.9 NC_002512.2 + 89108 0.71 0.610908
Target:  5'- uCGCGCGUCUGgUCGGCGGUCGUUUg- -3'
miRNA:   3'- -GUGCGCGGGCaGGUUGCCGGCAAGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.