miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9077 3' -58.3 NC_002512.2 + 42230 0.66 0.914204
Target:  5'- gCCCGCggaucCUGCCGGauauuaccGAUCCGCggACGg -3'
miRNA:   3'- gGGGCG-----GACGGCCa-------CUAGGUGa-UGUg -5'
9077 3' -58.3 NC_002512.2 + 133551 0.66 0.914204
Target:  5'- gCCCCGCgUGCUcu---UCCACUGCGu -3'
miRNA:   3'- -GGGGCGgACGGccacuAGGUGAUGUg -5'
9077 3' -58.3 NC_002512.2 + 119552 0.66 0.914204
Target:  5'- gCCCGCUUGgCGGUGuaggUCACguacuCGCu -3'
miRNA:   3'- gGGGCGGACgGCCACua--GGUGau---GUG- -5'
9077 3' -58.3 NC_002512.2 + 72608 0.66 0.914204
Target:  5'- cUCCCGCUUGCUGc-GcgCCACgaACACg -3'
miRNA:   3'- -GGGGCGGACGGCcaCuaGGUGa-UGUG- -5'
9077 3' -58.3 NC_002512.2 + 118712 0.66 0.914204
Target:  5'- cCCCCGCCUGCCGcucgccggcgacGUGcuGUUCAacaGCAa -3'
miRNA:   3'- -GGGGCGGACGGC------------CAC--UAGGUga-UGUg -5'
9077 3' -58.3 NC_002512.2 + 26634 0.66 0.914204
Target:  5'- -aCCGCUacCgGGUGAUCCACcagcGCACg -3'
miRNA:   3'- ggGGCGGacGgCCACUAGGUGa---UGUG- -5'
9077 3' -58.3 NC_002512.2 + 17736 0.66 0.914204
Target:  5'- gUCCCGCC-GCCaGUGc-CCGCcgACGCa -3'
miRNA:   3'- -GGGGCGGaCGGcCACuaGGUGa-UGUG- -5'
9077 3' -58.3 NC_002512.2 + 75447 0.66 0.908496
Target:  5'- -aCCGUCgacggcGCCGGacaagGAUCCGCU-CGCg -3'
miRNA:   3'- ggGGCGGa-----CGGCCa----CUAGGUGAuGUG- -5'
9077 3' -58.3 NC_002512.2 + 120176 0.66 0.908496
Target:  5'- uUCCCGaucagcauCCUGUCGGUGAcgCCGggggUGCACa -3'
miRNA:   3'- -GGGGC--------GGACGGCCACUa-GGUg---AUGUG- -5'
9077 3' -58.3 NC_002512.2 + 93717 0.66 0.908496
Target:  5'- aCCCCGCC-GCgCGGcgGAUCgACggggACGg -3'
miRNA:   3'- -GGGGCGGaCG-GCCa-CUAGgUGa---UGUg -5'
9077 3' -58.3 NC_002512.2 + 103077 0.66 0.904372
Target:  5'- aCCUCGCaCUGCCGGUcgcagccgaagcaGGUCggguucugacacagGCUGCGCg -3'
miRNA:   3'- -GGGGCG-GACGGCCA-------------CUAGg-------------UGAUGUG- -5'
9077 3' -58.3 NC_002512.2 + 25128 0.66 0.902572
Target:  5'- cCCCgCGCCccagGCCGG-GAU-CGCUgaGCACc -3'
miRNA:   3'- -GGG-GCGGa---CGGCCaCUAgGUGA--UGUG- -5'
9077 3' -58.3 NC_002512.2 + 107915 0.66 0.902572
Target:  5'- gUCCCGCCggcggGCgGGgacccgGGUCaGCUGCAg -3'
miRNA:   3'- -GGGGCGGa----CGgCCa-----CUAGgUGAUGUg -5'
9077 3' -58.3 NC_002512.2 + 81797 0.66 0.902572
Target:  5'- gCCgCCGCCgccGCCGGgggacgGAcgaCCGCgGCGCg -3'
miRNA:   3'- -GG-GGCGGa--CGGCCa-----CUa--GGUGaUGUG- -5'
9077 3' -58.3 NC_002512.2 + 38586 0.66 0.902572
Target:  5'- aCCCCGCCgcgGuuGGUaucgGAUCUguuaucguGCgACACg -3'
miRNA:   3'- -GGGGCGGa--CggCCA----CUAGG--------UGaUGUG- -5'
9077 3' -58.3 NC_002512.2 + 98808 0.66 0.902572
Target:  5'- aCCCCGgCgGCCGGagcgacgGAUCgGCcuccgGCGCg -3'
miRNA:   3'- -GGGGCgGaCGGCCa------CUAGgUGa----UGUG- -5'
9077 3' -58.3 NC_002512.2 + 133111 0.66 0.902572
Target:  5'- uCCCCGUCggcuacGCCcauGGUGGUCUugaACUcgaGCACg -3'
miRNA:   3'- -GGGGCGGa-----CGG---CCACUAGG---UGA---UGUG- -5'
9077 3' -58.3 NC_002512.2 + 55405 0.66 0.896436
Target:  5'- gCCCCGCCgagcgugccGCUGGUGGUgUACaACuCg -3'
miRNA:   3'- -GGGGCGGa--------CGGCCACUAgGUGaUGuG- -5'
9077 3' -58.3 NC_002512.2 + 13328 0.66 0.896436
Target:  5'- gCCCGCCgcaUGCUGGcguucgcGcgCCGCUGCuACg -3'
miRNA:   3'- gGGGCGG---ACGGCCa------CuaGGUGAUG-UG- -5'
9077 3' -58.3 NC_002512.2 + 5752 0.66 0.896436
Target:  5'- gUCCGCCUcCCGGcgcgGGUCCACgGC-Cg -3'
miRNA:   3'- gGGGCGGAcGGCCa---CUAGGUGaUGuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.