miRNA display CGI


Results 1 - 20 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9077 5' -54.3 NC_002512.2 + 166323 0.66 0.979632
Target:  5'- uGGCCAGgaucccccucCGGAgggucaucuUCGacgGCCAGCAGAu- -3'
miRNA:   3'- gCCGGUU----------GUCU---------AGCa--CGGUCGUCUug -5'
9077 5' -54.3 NC_002512.2 + 160975 0.66 0.979632
Target:  5'- aGGCC-GCGG--CG-GCCAGCAGcACg -3'
miRNA:   3'- gCCGGuUGUCuaGCaCGGUCGUCuUG- -5'
9077 5' -54.3 NC_002512.2 + 153021 0.66 0.979632
Target:  5'- gGGUCGGCGGGagcgguccccggUCGgGUCGGCGGGAg -3'
miRNA:   3'- gCCGGUUGUCU------------AGCaCGGUCGUCUUg -5'
9077 5' -54.3 NC_002512.2 + 152971 0.66 0.979632
Target:  5'- gGGUCGGCGGGagcgguccccggUCGgGUCGGCGGGAg -3'
miRNA:   3'- gCCGGUUGUCU------------AGCaCGGUCGUCUUg -5'
9077 5' -54.3 NC_002512.2 + 193909 0.66 0.978285
Target:  5'- gCGGUCGGCGGAUCGcGUCccggacuccgcugacGGCcggGGAACg -3'
miRNA:   3'- -GCCGGUUGUCUAGCaCGG---------------UCG---UCUUG- -5'
9077 5' -54.3 NC_002512.2 + 14348 0.66 0.977351
Target:  5'- aCGGCCAGCAgGAUCuc-CCGG-AGGGCg -3'
miRNA:   3'- -GCCGGUUGU-CUAGcacGGUCgUCUUG- -5'
9077 5' -54.3 NC_002512.2 + 108739 0.66 0.977351
Target:  5'- aGGCCuucucGCGGAggcaGUGCgCGGCGcGGGCg -3'
miRNA:   3'- gCCGGu----UGUCUag--CACG-GUCGU-CUUG- -5'
9077 5' -54.3 NC_002512.2 + 203188 0.66 0.977351
Target:  5'- -cGCCAGcCAGGUCaccGCCAGCAcGGCg -3'
miRNA:   3'- gcCGGUU-GUCUAGca-CGGUCGUcUUG- -5'
9077 5' -54.3 NC_002512.2 + 223917 0.66 0.977351
Target:  5'- gCGGgCGAgAGGUCGaGCCGGaCGGGGa -3'
miRNA:   3'- -GCCgGUUgUCUAGCaCGGUC-GUCUUg -5'
9077 5' -54.3 NC_002512.2 + 69514 0.66 0.977351
Target:  5'- aGGCCuuccACAGGcCGUGCgaGGCAuuGAGCu -3'
miRNA:   3'- gCCGGu---UGUCUaGCACGg-UCGU--CUUG- -5'
9077 5' -54.3 NC_002512.2 + 114127 0.66 0.977351
Target:  5'- aCGGCCAcCGGuccgaGgagcaGCCGGCAGAGg -3'
miRNA:   3'- -GCCGGUuGUCuag--Ca----CGGUCGUCUUg -5'
9077 5' -54.3 NC_002512.2 + 175002 0.66 0.977351
Target:  5'- uCGGCa---GGAucuUCGUcGCCAGCAGGuACa -3'
miRNA:   3'- -GCCGguugUCU---AGCA-CGGUCGUCU-UG- -5'
9077 5' -54.3 NC_002512.2 + 45091 0.66 0.977351
Target:  5'- aCGGCCAcCGGGUCGUGuCCGauccGCGuauACg -3'
miRNA:   3'- -GCCGGUuGUCUAGCAC-GGU----CGUcu-UG- -5'
9077 5' -54.3 NC_002512.2 + 151579 0.66 0.975895
Target:  5'- cCGGCgAGgAGAUCGgucaugGCCGGUuauagacauuuggggGGAGCc -3'
miRNA:   3'- -GCCGgUUgUCUAGCa-----CGGUCG---------------UCUUG- -5'
9077 5' -54.3 NC_002512.2 + 113392 0.66 0.974888
Target:  5'- gGGCCAGCAGG--GU-CCGGUAGuGCg -3'
miRNA:   3'- gCCGGUUGUCUagCAcGGUCGUCuUG- -5'
9077 5' -54.3 NC_002512.2 + 99402 0.66 0.974888
Target:  5'- cCGGCUgcGACGGAUCGgGCCccgaccgaccCAGGACg -3'
miRNA:   3'- -GCCGG--UUGUCUAGCaCGGuc--------GUCUUG- -5'
9077 5' -54.3 NC_002512.2 + 210793 0.66 0.974631
Target:  5'- aCGGCCAACGGccacuacggcaucAUCGggcucgcgcuCCGGUGGGACa -3'
miRNA:   3'- -GCCGGUUGUC-------------UAGCac--------GGUCGUCUUG- -5'
9077 5' -54.3 NC_002512.2 + 198521 0.66 0.974112
Target:  5'- uCGGgucgccuucgaucuCCAGCucguGGUCGUaGCCGGcCAGGGCg -3'
miRNA:   3'- -GCC--------------GGUUGu---CUAGCA-CGGUC-GUCUUG- -5'
9077 5' -54.3 NC_002512.2 + 8838 0.66 0.972235
Target:  5'- gGGCCAGaCGGGcUCGcUGCCGGgCGGcACc -3'
miRNA:   3'- gCCGGUU-GUCU-AGC-ACGGUC-GUCuUG- -5'
9077 5' -54.3 NC_002512.2 + 71340 0.66 0.972235
Target:  5'- gCGGCCcaccAGCAGGUCcaccaGCCGGguGAcgaGCa -3'
miRNA:   3'- -GCCGG----UUGUCUAGca---CGGUCguCU---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.