miRNA display CGI


Results 1 - 20 of 171 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9078 5' -55.6 NC_002512.2 + 72191 0.66 0.963947
Target:  5'- -cGCCGagGCGaaggCGCGGAAGuCCAUc -3'
miRNA:   3'- cuCGGUagCGCga--GCGCUUUCuGGUG- -5'
9078 5' -55.6 NC_002512.2 + 17801 0.66 0.963947
Target:  5'- cGAGCa--CGCGCUCGuCGuacAGGCgGCg -3'
miRNA:   3'- -CUCGguaGCGCGAGC-GCuu-UCUGgUG- -5'
9078 5' -55.6 NC_002512.2 + 125029 0.66 0.963947
Target:  5'- gGGGCCGagGuCGC-CGUGAGGGACgAUa -3'
miRNA:   3'- -CUCGGUagC-GCGaGCGCUUUCUGgUG- -5'
9078 5' -55.6 NC_002512.2 + 198022 0.66 0.963947
Target:  5'- gGGGCgAgggaCGCGCgCGCGAGGGGaCGCg -3'
miRNA:   3'- -CUCGgUa---GCGCGaGCGCUUUCUgGUG- -5'
9078 5' -55.6 NC_002512.2 + 49135 0.66 0.960565
Target:  5'- -cGCCAagaUCGCGgaCGCGGuacAGGCCuACc -3'
miRNA:   3'- cuCGGU---AGCGCgaGCGCUu--UCUGG-UG- -5'
9078 5' -55.6 NC_002512.2 + 61517 0.66 0.960565
Target:  5'- cGGCCA-CGUGCgUGCGAcagGAGuCCACc -3'
miRNA:   3'- cUCGGUaGCGCGaGCGCU---UUCuGGUG- -5'
9078 5' -55.6 NC_002512.2 + 110518 0.66 0.960565
Target:  5'- cGGCCG-CGCGC-CGCGAgcGAGucGCCGu -3'
miRNA:   3'- cUCGGUaGCGCGaGCGCU--UUC--UGGUg -5'
9078 5' -55.6 NC_002512.2 + 6669 0.66 0.960565
Target:  5'- cGAGCCGgccgggaCGCGCUC-CGGGAcGCCGu -3'
miRNA:   3'- -CUCGGUa------GCGCGAGcGCUUUcUGGUg -5'
9078 5' -55.6 NC_002512.2 + 44190 0.66 0.960565
Target:  5'- cGGUgGUCGCGCa-GCGAggcgcagaaGAGACCGa -3'
miRNA:   3'- cUCGgUAGCGCGagCGCU---------UUCUGGUg -5'
9078 5' -55.6 NC_002512.2 + 117122 0.66 0.960565
Target:  5'- aGGCCAcCGUG-UCGCGGGAcGGCCGg -3'
miRNA:   3'- cUCGGUaGCGCgAGCGCUUU-CUGGUg -5'
9078 5' -55.6 NC_002512.2 + 12430 0.66 0.960565
Target:  5'- -cGCCG-CGCGCgagGCGGGAGcugggcuucucgGCCACg -3'
miRNA:   3'- cuCGGUaGCGCGag-CGCUUUC------------UGGUG- -5'
9078 5' -55.6 NC_002512.2 + 139221 0.66 0.960565
Target:  5'- uGGCCGcCGCgGC-CGcCGAcuccGAGACCGCg -3'
miRNA:   3'- cUCGGUaGCG-CGaGC-GCU----UUCUGGUG- -5'
9078 5' -55.6 NC_002512.2 + 225503 0.66 0.960565
Target:  5'- gGGGCCGcCGCGggggucccgggcUUCGCGGAcgGGACgGCg -3'
miRNA:   3'- -CUCGGUaGCGC------------GAGCGCUU--UCUGgUG- -5'
9078 5' -55.6 NC_002512.2 + 141473 0.66 0.960565
Target:  5'- gGAGCCGUCGCGaC-CGacacaucugaGGGAGAUgGCg -3'
miRNA:   3'- -CUCGGUAGCGC-GaGCg---------CUUUCUGgUG- -5'
9078 5' -55.6 NC_002512.2 + 33616 0.66 0.960565
Target:  5'- -uGCCGUcCGCGCUuccgcCGCGAccgguGACCGa -3'
miRNA:   3'- cuCGGUA-GCGCGA-----GCGCUuu---CUGGUg -5'
9078 5' -55.6 NC_002512.2 + 122119 0.66 0.959508
Target:  5'- -cGUCGgcCGCGCUggacagcguggacgUGCGGAAGAUCGCg -3'
miRNA:   3'- cuCGGUa-GCGCGA--------------GCGCUUUCUGGUG- -5'
9078 5' -55.6 NC_002512.2 + 14758 0.66 0.958433
Target:  5'- --cCCGUCGCGCggaccccggccguucUgGCGGucGGCCGCg -3'
miRNA:   3'- cucGGUAGCGCG---------------AgCGCUuuCUGGUG- -5'
9078 5' -55.6 NC_002512.2 + 22568 0.66 0.956969
Target:  5'- -cGCCgGUgGUGCUgGUGAacggcucgGAGGCCACg -3'
miRNA:   3'- cuCGG-UAgCGCGAgCGCU--------UUCUGGUG- -5'
9078 5' -55.6 NC_002512.2 + 31889 0.66 0.956969
Target:  5'- -cGuCCGUCGCccGCUCGCG-AAGACgAg -3'
miRNA:   3'- cuC-GGUAGCG--CGAGCGCuUUCUGgUg -5'
9078 5' -55.6 NC_002512.2 + 137272 0.66 0.956969
Target:  5'- -cGCCGUC-CGUccgucgUCGCGAccggccucGGGACCGCc -3'
miRNA:   3'- cuCGGUAGcGCG------AGCGCU--------UUCUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.