miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9079 3' -56.5 NC_002512.2 + 150331 0.66 0.953583
Target:  5'- cGAGGAcGCCGcGGCGgugaUGGAGUGCGAc -3'
miRNA:   3'- -CUUCU-CGGCcUUGCag--GUCUCGCGCU- -5'
9079 3' -56.5 NC_002512.2 + 129507 0.66 0.953583
Target:  5'- ---cGGCCGGGAaGUCgGGAGcCGCGu -3'
miRNA:   3'- cuucUCGGCCUUgCAGgUCUC-GCGCu -5'
9079 3' -56.5 NC_002512.2 + 156523 0.66 0.953583
Target:  5'- -cGGGGCgCGGGG-GUCCGGcGGCGgGAa -3'
miRNA:   3'- cuUCUCG-GCCUUgCAGGUC-UCGCgCU- -5'
9079 3' -56.5 NC_002512.2 + 138215 0.66 0.953583
Target:  5'- -cGGGGCCGacGGACGUCCGc-GCGCa- -3'
miRNA:   3'- cuUCUCGGC--CUUGCAGGUcuCGCGcu -5'
9079 3' -56.5 NC_002512.2 + 75027 0.66 0.953583
Target:  5'- cGAGGGCCGGGgacgaggggACGcacgaCGGAGgGCGGg -3'
miRNA:   3'- cUUCUCGGCCU---------UGCag---GUCUCgCGCU- -5'
9079 3' -56.5 NC_002512.2 + 107223 0.66 0.953583
Target:  5'- cGggGAGCCGcGGucaccguCGUCCGGcucgaaacgcaGGUGCGu -3'
miRNA:   3'- -CuuCUCGGC-CUu------GCAGGUC-----------UCGCGCu -5'
9079 3' -56.5 NC_002512.2 + 3464 0.66 0.953583
Target:  5'- cGAAGGuCCc--GCGUCCGGAGaCGCGGa -3'
miRNA:   3'- -CUUCUcGGccuUGCAGGUCUC-GCGCU- -5'
9079 3' -56.5 NC_002512.2 + 109935 0.66 0.949629
Target:  5'- uGGAGAGCuCGGAgacgGCGaUCgCGGAcuGCGCGu -3'
miRNA:   3'- -CUUCUCG-GCCU----UGC-AG-GUCU--CGCGCu -5'
9079 3' -56.5 NC_002512.2 + 122273 0.66 0.949629
Target:  5'- ----cGCgGGGACGUCCuGGAGCccgucaGCGAg -3'
miRNA:   3'- cuucuCGgCCUUGCAGG-UCUCG------CGCU- -5'
9079 3' -56.5 NC_002512.2 + 7794 0.66 0.949629
Target:  5'- cGAGGaAGuCCGGGAacgggGUCCGGGGaGCGGa -3'
miRNA:   3'- -CUUC-UC-GGCCUUg----CAGGUCUCgCGCU- -5'
9079 3' -56.5 NC_002512.2 + 177067 0.66 0.947151
Target:  5'- uGGAGAGCCGGugacccGCGUCCGucAGCccccgcugcgucuccGCGAc -3'
miRNA:   3'- -CUUCUCGGCCu-----UGCAGGUc-UCG---------------CGCU- -5'
9079 3' -56.5 NC_002512.2 + 20417 0.66 0.945456
Target:  5'- cGAGcAGCCGGuguuCG-CCGGAGC-CGAa -3'
miRNA:   3'- cUUC-UCGGCCuu--GCaGGUCUCGcGCU- -5'
9079 3' -56.5 NC_002512.2 + 145501 0.66 0.945456
Target:  5'- aGAGGAcgcuGCCGGGGCugcUCCGGcucuGCGCGu -3'
miRNA:   3'- -CUUCU----CGGCCUUGc--AGGUCu---CGCGCu -5'
9079 3' -56.5 NC_002512.2 + 99816 0.66 0.945456
Target:  5'- -cAGuuUCGGGAcCGUCCAGGGaCGCGu -3'
miRNA:   3'- cuUCucGGCCUU-GCAGGUCUC-GCGCu -5'
9079 3' -56.5 NC_002512.2 + 152681 0.66 0.942847
Target:  5'- -uGGGGCCGGcggccggucucgucGCGUCCccggucGGGGUGCGGc -3'
miRNA:   3'- cuUCUCGGCCu-------------UGCAGG------UCUCGCGCU- -5'
9079 3' -56.5 NC_002512.2 + 109174 0.66 0.941063
Target:  5'- -cGGGGCCGGGAUGaagagccCCAGGuGCGCc- -3'
miRNA:   3'- cuUCUCGGCCUUGCa------GGUCU-CGCGcu -5'
9079 3' -56.5 NC_002512.2 + 19351 0.66 0.941063
Target:  5'- aGAcGAuGCCGGAcCGUCgGGGGCucgGCGGc -3'
miRNA:   3'- -CUuCU-CGGCCUuGCAGgUCUCG---CGCU- -5'
9079 3' -56.5 NC_002512.2 + 99990 0.66 0.941063
Target:  5'- gGGAGAG-CGGAuCGUCgGcGAGgGCGAc -3'
miRNA:   3'- -CUUCUCgGCCUuGCAGgU-CUCgCGCU- -5'
9079 3' -56.5 NC_002512.2 + 11442 0.66 0.940611
Target:  5'- cGggGAcGCCGcGGACGggggCCGGGGaaggggcggagacCGCGAg -3'
miRNA:   3'- -CuuCU-CGGC-CUUGCa---GGUCUC-------------GCGCU- -5'
9079 3' -56.5 NC_002512.2 + 118540 0.66 0.93832
Target:  5'- gGggGAaacgaacgcggucgcGUCGG-ACGUCgGGAGCGuCGAa -3'
miRNA:   3'- -CuuCU---------------CGGCCuUGCAGgUCUCGC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.