miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9079 5' -62.7 NC_002512.2 + 10086 0.66 0.758867
Target:  5'- cCCCGCG-CGUCCCC--UAUCUGUg- -3'
miRNA:   3'- aGGGCGCgGCAGGGGcaGUAGGCGag -5'
9079 5' -62.7 NC_002512.2 + 149648 0.66 0.758867
Target:  5'- gCCCGgccCGCaCGUCCCgGagcugcccUAUCCGCUCc -3'
miRNA:   3'- aGGGC---GCG-GCAGGGgCa-------GUAGGCGAG- -5'
9079 5' -62.7 NC_002512.2 + 167284 0.66 0.758867
Target:  5'- -gCCGcCGCCGUCaCCCG-CGaccuguUCCGCg- -3'
miRNA:   3'- agGGC-GCGGCAG-GGGCaGU------AGGCGag -5'
9079 5' -62.7 NC_002512.2 + 129568 0.66 0.758867
Target:  5'- gUCCCgagGCGCCGggacgucggCCCCGUCGcccCCGacgaaCUCg -3'
miRNA:   3'- -AGGG---CGCGGCa--------GGGGCAGUa--GGC-----GAG- -5'
9079 5' -62.7 NC_002512.2 + 112996 0.66 0.758867
Target:  5'- gCCCGCcCCGgCCCCGcCGccagCCGCg- -3'
miRNA:   3'- aGGGCGcGGCaGGGGCaGUa---GGCGag -5'
9079 5' -62.7 NC_002512.2 + 179460 0.66 0.758867
Target:  5'- aUCCgGCGCCGgCCUCuUCcugGUCUGCUUc -3'
miRNA:   3'- -AGGgCGCGGCaGGGGcAG---UAGGCGAG- -5'
9079 5' -62.7 NC_002512.2 + 5985 0.66 0.758867
Target:  5'- cUCgCCGCGCCGcUCCCGcUCcUCCucCUCg -3'
miRNA:   3'- -AG-GGCGCGGCaGGGGC-AGuAGGc-GAG- -5'
9079 5' -62.7 NC_002512.2 + 190802 0.66 0.758867
Target:  5'- uUCCuCGCGuCCGaccuguacaccuUCCUCGUCcugggccucGUCCGCUa -3'
miRNA:   3'- -AGG-GCGC-GGC------------AGGGGCAG---------UAGGCGAg -5'
9079 5' -62.7 NC_002512.2 + 174770 0.66 0.758867
Target:  5'- -aCCGCGuCCGUCUCCGcgaacUCGUCCa--- -3'
miRNA:   3'- agGGCGC-GGCAGGGGC-----AGUAGGcgag -5'
9079 5' -62.7 NC_002512.2 + 135089 0.66 0.758867
Target:  5'- cCCCGCGUCuaCCgCGUCGUgCGCg- -3'
miRNA:   3'- aGGGCGCGGcaGGgGCAGUAgGCGag -5'
9079 5' -62.7 NC_002512.2 + 117730 0.66 0.758867
Target:  5'- cUCgaGCGCCGgcUCgCCGUCGaCCGcCUCg -3'
miRNA:   3'- -AGggCGCGGC--AGgGGCAGUaGGC-GAG- -5'
9079 5' -62.7 NC_002512.2 + 2610 0.66 0.758867
Target:  5'- cUCCUgGUGCUGUUCuCCGcCGUCCugucGCUCg -3'
miRNA:   3'- -AGGG-CGCGGCAGG-GGCaGUAGG----CGAG- -5'
9079 5' -62.7 NC_002512.2 + 67959 0.66 0.758867
Target:  5'- -gUCGCGCCGguUCgCCGUggCGUCCGC-Cg -3'
miRNA:   3'- agGGCGCGGC--AGgGGCA--GUAGGCGaG- -5'
9079 5' -62.7 NC_002512.2 + 225265 0.66 0.758867
Target:  5'- cUCCGCcaggagGgCGUCCUCGgCGUCCGuCUCg -3'
miRNA:   3'- aGGGCG------CgGCAGGGGCaGUAGGC-GAG- -5'
9079 5' -62.7 NC_002512.2 + 75075 0.66 0.758867
Target:  5'- -gCCGcCGCUGcCUCCGUCGcucacucCCGCUCc -3'
miRNA:   3'- agGGC-GCGGCaGGGGCAGUa------GGCGAG- -5'
9079 5' -62.7 NC_002512.2 + 214775 0.66 0.757983
Target:  5'- gUCCgGCGCCGgucgcccuccgggUCCCCugGUCgcggagGUCCGuCUCc -3'
miRNA:   3'- -AGGgCGCGGC-------------AGGGG--CAG------UAGGC-GAG- -5'
9079 5' -62.7 NC_002512.2 + 99093 0.66 0.756212
Target:  5'- aCCgCGUGCUGcgcgucggcggcccUCCUCGUgGUCCGCg- -3'
miRNA:   3'- aGG-GCGCGGC--------------AGGGGCAgUAGGCGag -5'
9079 5' -62.7 NC_002512.2 + 14909 0.66 0.754438
Target:  5'- aUCCCgaggucgGCGUCGgucuggauccggaCCCCGUgCGUCCGCg- -3'
miRNA:   3'- -AGGG-------CGCGGCa------------GGGGCA-GUAGGCGag -5'
9079 5' -62.7 NC_002512.2 + 10020 0.66 0.749986
Target:  5'- cCCCG-GCCucGUCaCCCGUCcgcgAUCCGCc- -3'
miRNA:   3'- aGGGCgCGG--CAG-GGGCAG----UAGGCGag -5'
9079 5' -62.7 NC_002512.2 + 80613 0.66 0.749986
Target:  5'- cUCCuCGCGCuccuCGUCguaCCCGUCcggccGUCCGCg- -3'
miRNA:   3'- -AGG-GCGCG----GCAG---GGGCAG-----UAGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.