miRNA display CGI


Results 1 - 20 of 435 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9081 3' -63.1 NC_002512.2 + 148030 0.66 0.771037
Target:  5'- uGUCGCUuCCCGcCGACGCUcCC-CGa -3'
miRNA:   3'- cCAGCGGcGGGCaGCUGCGGcGGaGC- -5'
9081 3' -63.1 NC_002512.2 + 27391 0.66 0.771037
Target:  5'- --cCGCCGCCgaacugcugaGUCGGCagaucGCCGCCgUCGc -3'
miRNA:   3'- ccaGCGGCGGg---------CAGCUG-----CGGCGG-AGC- -5'
9081 3' -63.1 NC_002512.2 + 45220 0.66 0.771037
Target:  5'- cGGcCGCCGaCCGgauuUCGGCGCggCGCCcgCGg -3'
miRNA:   3'- -CCaGCGGCgGGC----AGCUGCG--GCGGa-GC- -5'
9081 3' -63.1 NC_002512.2 + 137966 0.66 0.771037
Target:  5'- aGUCgGCCGCCgaCGgcgCGcCGCCGCCcCa -3'
miRNA:   3'- cCAG-CGGCGG--GCa--GCuGCGGCGGaGc -5'
9081 3' -63.1 NC_002512.2 + 2120 0.66 0.771037
Target:  5'- cGGUCGCgGgC-GUCGAgcguucgguCGUCGCCUCc -3'
miRNA:   3'- -CCAGCGgCgGgCAGCU---------GCGGCGGAGc -5'
9081 3' -63.1 NC_002512.2 + 6691 0.66 0.771037
Target:  5'- gGGaCGCCGucCCCGUCGG-GCgGCC-CGu -3'
miRNA:   3'- -CCaGCGGC--GGGCAGCUgCGgCGGaGC- -5'
9081 3' -63.1 NC_002512.2 + 99098 0.66 0.771037
Target:  5'- --gUGCUGCgCGUCGGCGgCCcuCCUCGu -3'
miRNA:   3'- ccaGCGGCGgGCAGCUGC-GGc-GGAGC- -5'
9081 3' -63.1 NC_002512.2 + 202131 0.66 0.771037
Target:  5'- uGG-CGCCGgUC-UCGGcCGCCGCCgCGg -3'
miRNA:   3'- -CCaGCGGCgGGcAGCU-GCGGCGGaGC- -5'
9081 3' -63.1 NC_002512.2 + 19160 0.66 0.771037
Target:  5'- uGGUCGaaggGCUCGUCGACGCUGaggaagCGg -3'
miRNA:   3'- -CCAGCgg--CGGGCAGCUGCGGCgga---GC- -5'
9081 3' -63.1 NC_002512.2 + 222638 0.66 0.771037
Target:  5'- cGGaCGCCGCuCCGccgCGACGgCCGgC-CGg -3'
miRNA:   3'- -CCaGCGGCG-GGCa--GCUGC-GGCgGaGC- -5'
9081 3' -63.1 NC_002512.2 + 136158 0.66 0.771037
Target:  5'- cGUCcCCGucCCCGUCGAU-CCGCCgcgCGg -3'
miRNA:   3'- cCAGcGGC--GGGCAGCUGcGGCGGa--GC- -5'
9081 3' -63.1 NC_002512.2 + 6299 0.66 0.771037
Target:  5'- cGGUgcUGCUGUacaCGUCGAgguggcCGCCGCCcgCGg -3'
miRNA:   3'- -CCA--GCGGCGg--GCAGCU------GCGGCGGa-GC- -5'
9081 3' -63.1 NC_002512.2 + 95895 0.66 0.771037
Target:  5'- aGGUCGCCcgGCCgGgugcCGACGagGaCCUCGa -3'
miRNA:   3'- -CCAGCGG--CGGgCa---GCUGCggC-GGAGC- -5'
9081 3' -63.1 NC_002512.2 + 39671 0.66 0.771037
Target:  5'- cGUgGCCGuCCCGgaCGaccGCGCCGCCg-- -3'
miRNA:   3'- cCAgCGGC-GGGCa-GC---UGCGGCGGagc -5'
9081 3' -63.1 NC_002512.2 + 109946 0.66 0.771037
Target:  5'- aGUCcaCCGCgUGcgggggCGACGCCGCgCUCGa -3'
miRNA:   3'- cCAGc-GGCGgGCa-----GCUGCGGCG-GAGC- -5'
9081 3' -63.1 NC_002512.2 + 4365 0.66 0.771037
Target:  5'- --cCGCCGuCCCGUCcGCGaaGCC-CGg -3'
miRNA:   3'- ccaGCGGC-GGGCAGcUGCggCGGaGC- -5'
9081 3' -63.1 NC_002512.2 + 200857 0.66 0.771037
Target:  5'- cGUCucuGCCGCauggCGUCGAccaCGCCGCC-Ca -3'
miRNA:   3'- cCAG---CGGCGg---GCAGCU---GCGGCGGaGc -5'
9081 3' -63.1 NC_002512.2 + 140535 0.66 0.770181
Target:  5'- aGGaCgGCCGCC--UCGACGCCGuucugguccucuaCCUCGa -3'
miRNA:   3'- -CCaG-CGGCGGgcAGCUGCGGC-------------GGAGC- -5'
9081 3' -63.1 NC_002512.2 + 14748 0.66 0.762431
Target:  5'- cGUCGCCuccCCCGUCG-CGCgGaCCcCGg -3'
miRNA:   3'- cCAGCGGc--GGGCAGCuGCGgC-GGaGC- -5'
9081 3' -63.1 NC_002512.2 + 83781 0.66 0.762431
Target:  5'- cGG-CGCCGCcgccgCCGcCGAgGaCCGCgUCGg -3'
miRNA:   3'- -CCaGCGGCG-----GGCaGCUgC-GGCGgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.