miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9081 5' -56.3 NC_002512.2 + 99046 0.66 0.966977
Target:  5'- gCCCGAc-CGCCGguacUCGACcgCGGGGUu -3'
miRNA:   3'- -GGGCUuaGCGGCa---GGCUGa-GCUCCAu -5'
9081 5' -56.3 NC_002512.2 + 76464 0.66 0.966977
Target:  5'- gCCGc--UGCCGuUCCGACagUCGAGGa- -3'
miRNA:   3'- gGGCuuaGCGGC-AGGCUG--AGCUCCau -5'
9081 5' -56.3 NC_002512.2 + 123161 0.66 0.966977
Target:  5'- gCCGcGAUCGCCG-CCGAggcCGAGGc- -3'
miRNA:   3'- gGGC-UUAGCGGCaGGCUga-GCUCCau -5'
9081 5' -56.3 NC_002512.2 + 199481 0.66 0.966977
Target:  5'- gCCCGcGUCcCCGUCCGucaggGCcgCGAGGa- -3'
miRNA:   3'- -GGGCuUAGcGGCAGGC-----UGa-GCUCCau -5'
9081 5' -56.3 NC_002512.2 + 158679 0.66 0.963878
Target:  5'- gCCGGAUCaugGCCGgCCGGgaCGGGGa- -3'
miRNA:   3'- gGGCUUAG---CGGCaGGCUgaGCUCCau -5'
9081 5' -56.3 NC_002512.2 + 45981 0.66 0.963878
Target:  5'- uCCCGAGgcaGCCGUUCGACUguccguaacCGGaaacGGUGu -3'
miRNA:   3'- -GGGCUUag-CGGCAGGCUGA---------GCU----CCAU- -5'
9081 5' -56.3 NC_002512.2 + 6085 0.66 0.963878
Target:  5'- uCCCGGcgGUCGCCG-CCGACguccccggCGAcguccGGUc -3'
miRNA:   3'- -GGGCU--UAGCGGCaGGCUGa-------GCU-----CCAu -5'
9081 5' -56.3 NC_002512.2 + 188372 0.66 0.963878
Target:  5'- aCCCGAGUUGCCG-CacgggaGAUggCGGGGa- -3'
miRNA:   3'- -GGGCUUAGCGGCaGg-----CUGa-GCUCCau -5'
9081 5' -56.3 NC_002512.2 + 199207 0.66 0.960581
Target:  5'- -aCGggUUGUCGUCCGACcgCGccgcccGGUAg -3'
miRNA:   3'- ggGCuuAGCGGCAGGCUGa-GCu-----CCAU- -5'
9081 5' -56.3 NC_002512.2 + 144662 0.66 0.960581
Target:  5'- aCCUGu-UCGCgGUCCGgGCgagCGAGGa- -3'
miRNA:   3'- -GGGCuuAGCGgCAGGC-UGa--GCUCCau -5'
9081 5' -56.3 NC_002512.2 + 33313 0.66 0.960581
Target:  5'- -aCGGAcaCGCCGUCCGGCcaggaGAGGg- -3'
miRNA:   3'- ggGCUUa-GCGGCAGGCUGag---CUCCau -5'
9081 5' -56.3 NC_002512.2 + 75103 0.66 0.960581
Target:  5'- gCUCGAcGUCGCCGcCUGGCggacaCGGGGa- -3'
miRNA:   3'- -GGGCU-UAGCGGCaGGCUGa----GCUCCau -5'
9081 5' -56.3 NC_002512.2 + 95713 0.66 0.960581
Target:  5'- gCCGAAgaaCGCCGccagggUCCGGgUCGAcgGGUAc -3'
miRNA:   3'- gGGCUUa--GCGGC------AGGCUgAGCU--CCAU- -5'
9081 5' -56.3 NC_002512.2 + 147517 0.66 0.960581
Target:  5'- uCCCGuccCGCCGaucCCGGCgCGAGGc- -3'
miRNA:   3'- -GGGCuuaGCGGCa--GGCUGaGCUCCau -5'
9081 5' -56.3 NC_002512.2 + 217490 0.66 0.959553
Target:  5'- uCCCGGcgcCGCCG-CCGccgcccgaaggcgaGCUCGGGGg- -3'
miRNA:   3'- -GGGCUua-GCGGCaGGC--------------UGAGCUCCau -5'
9081 5' -56.3 NC_002512.2 + 41600 0.66 0.957082
Target:  5'- aCCCG-GUUGCCGgCCGugaACUCGAccucGGUGu -3'
miRNA:   3'- -GGGCuUAGCGGCaGGC---UGAGCU----CCAU- -5'
9081 5' -56.3 NC_002512.2 + 4154 0.66 0.957082
Target:  5'- cCCCGAcugagcgaGUCGCCG--CGGCUCGcGGg- -3'
miRNA:   3'- -GGGCU--------UAGCGGCagGCUGAGCuCCau -5'
9081 5' -56.3 NC_002512.2 + 178442 0.66 0.957082
Target:  5'- aUCGggUCGgCGcguUCCGugUCGAucaGGUGg -3'
miRNA:   3'- gGGCuuAGCgGC---AGGCugAGCU---CCAU- -5'
9081 5' -56.3 NC_002512.2 + 125032 0.66 0.954884
Target:  5'- gCCGAgGUCGCCGugagggacgauaccuUCCGcCUCGugaGGGUGg -3'
miRNA:   3'- gGGCU-UAGCGGC---------------AGGCuGAGC---UCCAU- -5'
9081 5' -56.3 NC_002512.2 + 19912 0.66 0.953376
Target:  5'- cCCCGGGaaGCCGUUggCGAcCUUGAGGa- -3'
miRNA:   3'- -GGGCUUagCGGCAG--GCU-GAGCUCCau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.