miRNA display CGI


Results 1 - 20 of 227 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9082 3' -51.8 NC_002512.2 + 227627 0.66 0.997538
Target:  5'- gCGuGACAACcagACCGUaguguaCUGuguGCCGCAGGc -3'
miRNA:   3'- -GC-CUGUUG---UGGUAg-----GACu--UGGCGUUC- -5'
9082 3' -51.8 NC_002512.2 + 105117 0.66 0.997538
Target:  5'- gGGACuGCGCgGUCguCUGGGCCGaCGAc -3'
miRNA:   3'- gCCUGuUGUGgUAG--GACUUGGC-GUUc -5'
9082 3' -51.8 NC_002512.2 + 193002 0.66 0.997538
Target:  5'- uGGACcgcgGGCGCCGcCCUGcccACCuGCAAGu -3'
miRNA:   3'- gCCUG----UUGUGGUaGGACu--UGG-CGUUC- -5'
9082 3' -51.8 NC_002512.2 + 119379 0.66 0.997538
Target:  5'- uGGACGACGCgGcggCCcu-GCUGCAGGg -3'
miRNA:   3'- gCCUGUUGUGgUa--GGacuUGGCGUUC- -5'
9082 3' -51.8 NC_002512.2 + 44730 0.66 0.997538
Target:  5'- uGGACGccGCGCCGgagCCgguuaGAguGCCGCAGc -3'
miRNA:   3'- gCCUGU--UGUGGUa--GGa----CU--UGGCGUUc -5'
9082 3' -51.8 NC_002512.2 + 185435 0.66 0.997538
Target:  5'- aGGucuuCGAgGCCGUCCUGu-CCGCc-- -3'
miRNA:   3'- gCCu---GUUgUGGUAGGACuuGGCGuuc -5'
9082 3' -51.8 NC_002512.2 + 184787 0.66 0.997538
Target:  5'- aGGACGugGCCcgggCCU---CCGCGGGg -3'
miRNA:   3'- gCCUGUugUGGua--GGAcuuGGCGUUC- -5'
9082 3' -51.8 NC_002512.2 + 102053 0.66 0.997538
Target:  5'- gCGGACGcCGCCGacgaccUCCcgGAGCCGgGAc -3'
miRNA:   3'- -GCCUGUuGUGGU------AGGa-CUUGGCgUUc -5'
9082 3' -51.8 NC_002512.2 + 147076 0.66 0.997538
Target:  5'- uGGGCGACGC--UCUgGAGCCGCu-- -3'
miRNA:   3'- gCCUGUUGUGguAGGaCUUGGCGuuc -5'
9082 3' -51.8 NC_002512.2 + 26495 0.66 0.997538
Target:  5'- aCGGugGCGACGCUgccguUCCUGAugcugagcaACCGCGGc -3'
miRNA:   3'- -GCC--UGUUGUGGu----AGGACU---------UGGCGUUc -5'
9082 3' -51.8 NC_002512.2 + 182259 0.66 0.997538
Target:  5'- aGcGACGGCGCCAggaCgggGAACUGCAc- -3'
miRNA:   3'- gC-CUGUUGUGGUag-Ga--CUUGGCGUuc -5'
9082 3' -51.8 NC_002512.2 + 89345 0.66 0.997412
Target:  5'- aGGACcagaacggcgucgaGGCgGCCGUCCUGGcGCCGUAc- -3'
miRNA:   3'- gCCUG--------------UUG-UGGUAGGACU-UGGCGUuc -5'
9082 3' -51.8 NC_002512.2 + 4592 0.66 0.997097
Target:  5'- gGaGGCGGCGCCGc---GGGCCGCGAGa -3'
miRNA:   3'- gC-CUGUUGUGGUaggaCUUGGCGUUC- -5'
9082 3' -51.8 NC_002512.2 + 135514 0.66 0.997097
Target:  5'- -uGGCcACGCaCGUCCUGAggaugGCCGCcAGg -3'
miRNA:   3'- gcCUGuUGUG-GUAGGACU-----UGGCGuUC- -5'
9082 3' -51.8 NC_002512.2 + 173683 0.66 0.997097
Target:  5'- gCGGcGCAAacaguucgucacCGCCGUCCUGGGacugcCCGCGAc -3'
miRNA:   3'- -GCC-UGUU------------GUGGUAGGACUU-----GGCGUUc -5'
9082 3' -51.8 NC_002512.2 + 108798 0.66 0.997097
Target:  5'- aCGGGCcGCugCGggCgCUGuuCCGCGAGg -3'
miRNA:   3'- -GCCUGuUGugGUa-G-GACuuGGCGUUC- -5'
9082 3' -51.8 NC_002512.2 + 184370 0.66 0.997097
Target:  5'- uCGGAUuGCGgucCCGUCCUGAugguACCGaCGAu -3'
miRNA:   3'- -GCCUGuUGU---GGUAGGACU----UGGC-GUUc -5'
9082 3' -51.8 NC_002512.2 + 48132 0.66 0.997097
Target:  5'- uGGACGaacGCGgCGUUCaacgUGAACCGCAu- -3'
miRNA:   3'- gCCUGU---UGUgGUAGG----ACUUGGCGUuc -5'
9082 3' -51.8 NC_002512.2 + 207291 0.66 0.997097
Target:  5'- cCGGACGuguccaGCACCGUggCCUccGAGCCGUu-- -3'
miRNA:   3'- -GCCUGU------UGUGGUA--GGA--CUUGGCGuuc -5'
9082 3' -51.8 NC_002512.2 + 98179 0.66 0.997097
Target:  5'- aCGGGCGcgGCgACCGUCCgagGGAUgGCGu- -3'
miRNA:   3'- -GCCUGU--UG-UGGUAGGa--CUUGgCGUuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.