miRNA display CGI


Results 1 - 20 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9082 5' -55.3 NC_002512.2 + 4795 0.66 0.976752
Target:  5'- cGGUUgCGAcGGUugCUGCGGCaGCuGCUGCGg -3'
miRNA:   3'- -CCGA-GUU-CCA--GAUGCUG-CG-CGACGCg -5'
9082 5' -55.3 NC_002512.2 + 66002 0.66 0.976752
Target:  5'- cGGCUgGGGGUCU-CG-CaGCGCUcCGUc -3'
miRNA:   3'- -CCGAgUUCCAGAuGCuG-CGCGAcGCG- -5'
9082 5' -55.3 NC_002512.2 + 64626 0.66 0.976752
Target:  5'- gGGUcCGGGGcUCcGCGACGCGUccGCGa -3'
miRNA:   3'- -CCGaGUUCC-AGaUGCUGCGCGa-CGCg -5'
9082 5' -55.3 NC_002512.2 + 126770 0.66 0.976752
Target:  5'- gGGCgcggCGGcGG-CgGCGACGCGUgccGCGCc -3'
miRNA:   3'- -CCGa---GUU-CCaGaUGCUGCGCGa--CGCG- -5'
9082 5' -55.3 NC_002512.2 + 200832 0.66 0.976752
Target:  5'- cGCg-AAGGUCaGCgGGgGCGCgGCGCg -3'
miRNA:   3'- cCGagUUCCAGaUG-CUgCGCGaCGCG- -5'
9082 5' -55.3 NC_002512.2 + 125142 0.66 0.976752
Target:  5'- cGGCgaCGAGGaCgGCGACGCGgaGaGCu -3'
miRNA:   3'- -CCGa-GUUCCaGaUGCUGCGCgaCgCG- -5'
9082 5' -55.3 NC_002512.2 + 174054 0.66 0.976752
Target:  5'- uGGCUCcucgucuccugGAGGaUCUucacCGcCGCGCggaugGCGCu -3'
miRNA:   3'- -CCGAG-----------UUCC-AGAu---GCuGCGCGa----CGCG- -5'
9082 5' -55.3 NC_002512.2 + 135071 0.66 0.975301
Target:  5'- cGGCUCcGGGacggcuccccccgcgUCUAC--CGCGUcgUGCGCg -3'
miRNA:   3'- -CCGAGuUCC---------------AGAUGcuGCGCG--ACGCG- -5'
9082 5' -55.3 NC_002512.2 + 153070 0.66 0.974297
Target:  5'- cGGgUCGGcGGUCgagGCGGCGaucgaaGCUGCu- -3'
miRNA:   3'- -CCgAGUU-CCAGa--UGCUGCg-----CGACGcg -5'
9082 5' -55.3 NC_002512.2 + 133793 0.66 0.974297
Target:  5'- cGGCggCGGGGaCgACGGuCGCGCcggGUGCg -3'
miRNA:   3'- -CCGa-GUUCCaGaUGCU-GCGCGa--CGCG- -5'
9082 5' -55.3 NC_002512.2 + 101025 0.66 0.974297
Target:  5'- aGGCgcagcacCAGGGcCcgcGCGGCGCccgagcggugcaGCUGCGCc -3'
miRNA:   3'- -CCGa------GUUCCaGa--UGCUGCG------------CGACGCG- -5'
9082 5' -55.3 NC_002512.2 + 72984 0.66 0.974297
Target:  5'- cGGcCUUggGGaUCUGCGGCcaGCgGgUGUGCa -3'
miRNA:   3'- -CC-GAGuuCC-AGAUGCUG--CG-CgACGCG- -5'
9082 5' -55.3 NC_002512.2 + 6906 0.66 0.974297
Target:  5'- cGGCaggUCGAGGaagacCGGCGCGUaGUGCa -3'
miRNA:   3'- -CCG---AGUUCCagau-GCUGCGCGaCGCG- -5'
9082 5' -55.3 NC_002512.2 + 158311 0.66 0.974297
Target:  5'- aGGC-CGcGGUCgucCGGCGCGaguccGCGCu -3'
miRNA:   3'- -CCGaGUuCCAGau-GCUGCGCga---CGCG- -5'
9082 5' -55.3 NC_002512.2 + 105650 0.66 0.974297
Target:  5'- cGGC-CGAGGUaggGCGAgcCGCaGCagacgGCGCg -3'
miRNA:   3'- -CCGaGUUCCAga-UGCU--GCG-CGa----CGCG- -5'
9082 5' -55.3 NC_002512.2 + 159281 0.66 0.974297
Target:  5'- aGCUCGGGGUgaAaaacaccgugaGACGUGCcucGCGCg -3'
miRNA:   3'- cCGAGUUCCAgaUg----------CUGCGCGa--CGCG- -5'
9082 5' -55.3 NC_002512.2 + 133878 0.66 0.974297
Target:  5'- cGGCUCGAGGagcggCU-CGGCcggcggucccggGCGCUG-GCc -3'
miRNA:   3'- -CCGAGUUCCa----GAuGCUG------------CGCGACgCG- -5'
9082 5' -55.3 NC_002512.2 + 134380 0.66 0.974297
Target:  5'- uGUUCGAGGUCcgggACGuCGUGUggaUGCGg -3'
miRNA:   3'- cCGAGUUCCAGa---UGCuGCGCG---ACGCg -5'
9082 5' -55.3 NC_002512.2 + 196925 0.66 0.971659
Target:  5'- cGGCgUCAcacGUCUccCGGCGUGUUGUGCc -3'
miRNA:   3'- -CCG-AGUuc-CAGAu-GCUGCGCGACGCG- -5'
9082 5' -55.3 NC_002512.2 + 213528 0.66 0.971659
Target:  5'- cGGgUCGGGGUgccCU-CGgaGCGUcuGCUGCGCg -3'
miRNA:   3'- -CCgAGUUCCA---GAuGC--UGCG--CGACGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.