miRNA display CGI


Results 1 - 20 of 335 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9083 5' -65.2 NC_002512.2 + 22780 0.66 0.658597
Target:  5'- -gUgCCCGACGaGCUGCG-CgCCCGCu -3'
miRNA:   3'- cuGgGGGCUGC-CGGCGCuGaGGGCGc -5'
9083 5' -65.2 NC_002512.2 + 98221 0.66 0.658597
Target:  5'- cGCCCUCG-CGGCCcucCuGCUCCUGUGg -3'
miRNA:   3'- cUGGGGGCuGCCGGc--GcUGAGGGCGC- -5'
9083 5' -65.2 NC_002512.2 + 97849 0.66 0.658597
Target:  5'- cACCCuCCGGucccUGGCCGaCGACgUCgCCGCc -3'
miRNA:   3'- cUGGG-GGCU----GCCGGC-GCUG-AG-GGCGc -5'
9083 5' -65.2 NC_002512.2 + 142068 0.66 0.658597
Target:  5'- cGGCCCcuCCGACcGCCGCG---CCCGCc -3'
miRNA:   3'- -CUGGG--GGCUGcCGGCGCugaGGGCGc -5'
9083 5' -65.2 NC_002512.2 + 222392 0.66 0.658597
Target:  5'- uGGCUCCUcAUGgagcGCCGCGGCUUCgGCGg -3'
miRNA:   3'- -CUGGGGGcUGC----CGGCGCUGAGGgCGC- -5'
9083 5' -65.2 NC_002512.2 + 140986 0.66 0.658597
Target:  5'- cGCUCCCGaACGGaCCGCGA---UCGCGa -3'
miRNA:   3'- cUGGGGGC-UGCC-GGCGCUgagGGCGC- -5'
9083 5' -65.2 NC_002512.2 + 222866 0.66 0.658597
Target:  5'- cGACgagCCCGGCaaGGCCcuGCGGCucUCCUGCGa -3'
miRNA:   3'- -CUGg--GGGCUG--CCGG--CGCUG--AGGGCGC- -5'
9083 5' -65.2 NC_002512.2 + 208655 0.66 0.658597
Target:  5'- cGCCCCCGucuCcGCCccggGCGGCgUCCCGgGg -3'
miRNA:   3'- cUGGGGGCu--GcCGG----CGCUG-AGGGCgC- -5'
9083 5' -65.2 NC_002512.2 + 184813 0.66 0.658597
Target:  5'- aGACCCUuccgCGcCGGCCGCGACaccUCCauCGa -3'
miRNA:   3'- -CUGGGG----GCuGCCGGCGCUG---AGGgcGC- -5'
9083 5' -65.2 NC_002512.2 + 9125 0.66 0.658597
Target:  5'- gGACCCgaCGuCGGCCuCGACggCCCaGCGc -3'
miRNA:   3'- -CUGGGg-GCuGCCGGcGCUGa-GGG-CGC- -5'
9083 5' -65.2 NC_002512.2 + 13674 0.66 0.658597
Target:  5'- aGCUCCCggacgaggcGACGGCCGCGGCggugaUCacgggCGCGa -3'
miRNA:   3'- cUGGGGG---------CUGCCGGCGCUG-----AGg----GCGC- -5'
9083 5' -65.2 NC_002512.2 + 192214 0.66 0.658597
Target:  5'- gGACCCUu--CGGCCucuuCGACgucgCCCGCGa -3'
miRNA:   3'- -CUGGGGgcuGCCGGc---GCUGa---GGGCGC- -5'
9083 5' -65.2 NC_002512.2 + 95251 0.66 0.658597
Target:  5'- gGGCgUCCgGAgGGCCGCGcgGCUCCUgaacgGCGg -3'
miRNA:   3'- -CUG-GGGgCUgCCGGCGC--UGAGGG-----CGC- -5'
9083 5' -65.2 NC_002512.2 + 87827 0.66 0.658597
Target:  5'- cGAuCCCCCGGcCGGgCGUcgGGCcCUCGCGg -3'
miRNA:   3'- -CU-GGGGGCU-GCCgGCG--CUGaGGGCGC- -5'
9083 5' -65.2 NC_002512.2 + 147489 0.66 0.655822
Target:  5'- cGCUgCgGACGGgCGCGACcggcgcuucucccgUCCCGCc -3'
miRNA:   3'- cUGGgGgCUGCCgGCGCUG--------------AGGGCGc -5'
9083 5' -65.2 NC_002512.2 + 2085 0.66 0.653045
Target:  5'- cACgCCgGgcgggagcgggcgguACGGCCGCGGCUCggUCGCGg -3'
miRNA:   3'- cUGgGGgC---------------UGCCGGCGCUGAG--GGCGC- -5'
9083 5' -65.2 NC_002512.2 + 24911 0.66 0.64934
Target:  5'- -gUCCCCGuCGcCCGCGGCgucgggcucggCCCGCa -3'
miRNA:   3'- cuGGGGGCuGCcGGCGCUGa----------GGGCGc -5'
9083 5' -65.2 NC_002512.2 + 91690 0.66 0.64934
Target:  5'- --gCCCCGACGGuaggauguCCGCGAUgcacacgcagCCCgGCGg -3'
miRNA:   3'- cugGGGGCUGCC--------GGCGCUGa---------GGG-CGC- -5'
9083 5' -65.2 NC_002512.2 + 28171 0.66 0.64934
Target:  5'- -cCCCCgCGACGacgacGCCGCcGCcgaUCCCGCa -3'
miRNA:   3'- cuGGGG-GCUGC-----CGGCGcUG---AGGGCGc -5'
9083 5' -65.2 NC_002512.2 + 37275 0.66 0.64934
Target:  5'- aGGCCgCCGuCGcccGCCGCGGCgCgCCGCa -3'
miRNA:   3'- -CUGGgGGCuGC---CGGCGCUGaG-GGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.