miRNA display CGI


Results 61 - 80 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 216211 0.66 0.642214
Target:  5'- -cGCG-GCCGUCGCCuCGuCCGGgagcUGGAg -3'
miRNA:   3'- uuCGCuCGGCGGCGG-GCuGGCU----GCCU- -5'
9085 3' -64 NC_002512.2 + 59264 0.66 0.679923
Target:  5'- gAAGCGAuGUCGCCcacGUCCGugacgucguGCuCGACGGAc -3'
miRNA:   3'- -UUCGCU-CGGCGG---CGGGC---------UG-GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 120872 0.66 0.651668
Target:  5'- -cGCGGGUccgcaggacgaCGCCGCCgGcGCCGACGa- -3'
miRNA:   3'- uuCGCUCG-----------GCGGCGGgC-UGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 11095 0.67 0.56685
Target:  5'- cGGCGGuGUCGuCCGCCuCGGCCucguccccgGACGGGg -3'
miRNA:   3'- uUCGCU-CGGC-GGCGG-GCUGG---------CUGCCU- -5'
9085 3' -64 NC_002512.2 + 43415 0.67 0.56685
Target:  5'- cGGCGAuCCGCCGgCCGAgCaGcACGGAg -3'
miRNA:   3'- uUCGCUcGGCGGCgGGCUgG-C-UGCCU- -5'
9085 3' -64 NC_002512.2 + 56461 0.67 0.623292
Target:  5'- cGAGaCGAGgCGCgCGaUgCGAUCGACGGAg -3'
miRNA:   3'- -UUC-GCUCgGCG-GC-GgGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 101977 0.67 0.56685
Target:  5'- cGGCGGGCuCGUgG-CCGAuCCGACGGu -3'
miRNA:   3'- uUCGCUCG-GCGgCgGGCU-GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 49604 0.67 0.565918
Target:  5'- aGGGCGAcgggaacGCCGCCGCCaugagGAUCGucCGGGc -3'
miRNA:   3'- -UUCGCU-------CGGCGGCGGg----CUGGCu-GCCU- -5'
9085 3' -64 NC_002512.2 + 42242 0.67 0.623292
Target:  5'- -cGUG-GCCGCCGCCCuccauGGCUGG-GGAg -3'
miRNA:   3'- uuCGCuCGGCGGCGGG-----CUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 105048 0.67 0.613837
Target:  5'- -cGCGGGCC-UCGCUCGGCgaCGGCGGc -3'
miRNA:   3'- uuCGCUCGGcGGCGGGCUG--GCUGCCu -5'
9085 3' -64 NC_002512.2 + 48360 0.67 0.594967
Target:  5'- -uGCGAGCUGCUGaaCGGCagcgaCGACGGGa -3'
miRNA:   3'- uuCGCUCGGCGGCggGCUG-----GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 64307 0.67 0.594967
Target:  5'- uGGgGAGCgGCUGCCCGGCCaccACGu- -3'
miRNA:   3'- uUCgCUCGgCGGCGGGCUGGc--UGCcu -5'
9085 3' -64 NC_002512.2 + 127221 0.67 0.585564
Target:  5'- cAGCGGGCgGCCGCCCucuccCCGGucuacgacauCGGGg -3'
miRNA:   3'- uUCGCUCGgCGGCGGGcu---GGCU----------GCCU- -5'
9085 3' -64 NC_002512.2 + 101605 0.67 0.585564
Target:  5'- -uGCGGGCgGCCGUCgGcCCGGCGc- -3'
miRNA:   3'- uuCGCUCGgCGGCGGgCuGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 73453 0.67 0.585564
Target:  5'- ---gGAGCCcCCcaGCCCGGCCG-CGGAc -3'
miRNA:   3'- uucgCUCGGcGG--CGGGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 22785 0.67 0.585564
Target:  5'- -cGaCGAGCUGCgCGCCCGcuACCacaagGGCGGGa -3'
miRNA:   3'- uuC-GCUCGGCG-GCGGGC--UGG-----CUGCCU- -5'
9085 3' -64 NC_002512.2 + 194977 0.67 0.592143
Target:  5'- gAGGCGcauaggacguccauGGCUGuCCGCuCCGACCGAacccgugucuCGGAa -3'
miRNA:   3'- -UUCGC--------------UCGGC-GGCG-GGCUGGCU----------GCCU- -5'
9085 3' -64 NC_002512.2 + 58026 0.67 0.582748
Target:  5'- cGGCGuuccgcccccucccGGCCGCgGCCgGACCGucccGCGGu -3'
miRNA:   3'- uUCGC--------------UCGGCGgCGGgCUGGC----UGCCu -5'
9085 3' -64 NC_002512.2 + 115868 0.67 0.57619
Target:  5'- -cGCGcccgguGCCGCUGCggGGCCGACGGc -3'
miRNA:   3'- uuCGCu-----CGGCGGCGggCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 21214 0.67 0.623292
Target:  5'- cAGCG-GCCcccgggacGCCGCCCGG--GGCGGAg -3'
miRNA:   3'- uUCGCuCGG--------CGGCGGGCUggCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.