miRNA display CGI


Results 101 - 120 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 202131 0.67 0.623292
Target:  5'- uGGCGccggucucGGCCGCCGCCgCGG--GGCGGGu -3'
miRNA:   3'- uUCGC--------UCGGCGGCGG-GCUggCUGCCU- -5'
9085 3' -64 NC_002512.2 + 7224 0.67 0.623292
Target:  5'- --uCGAGgCGCCccucgGCCCGGCCGgccgucgcgGCGGAg -3'
miRNA:   3'- uucGCUCgGCGG-----CGGGCUGGC---------UGCCU- -5'
9085 3' -64 NC_002512.2 + 124796 0.67 0.623292
Target:  5'- cGGgGAGacaCGUCGaCCCGACCGcCGGc -3'
miRNA:   3'- uUCgCUCg--GCGGC-GGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 42242 0.67 0.623292
Target:  5'- -cGUG-GCCGCCGCCCuccauGGCUGG-GGAg -3'
miRNA:   3'- uuCGCuCGGCGGCGGG-----CUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 56461 0.67 0.623292
Target:  5'- cGAGaCGAGgCGCgCGaUgCGAUCGACGGAg -3'
miRNA:   3'- -UUC-GCUCgGCG-GC-GgGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 141439 0.67 0.613837
Target:  5'- --aCGAGCCcCCGCUCGGuCCGACGu- -3'
miRNA:   3'- uucGCUCGGcGGCGGGCU-GGCUGCcu -5'
9085 3' -64 NC_002512.2 + 111797 0.67 0.611002
Target:  5'- -cGCGcGGUCGCCGCCgGcGCCGgagccgcccccuccGCGGAg -3'
miRNA:   3'- uuCGC-UCGGCGGCGGgC-UGGC--------------UGCCU- -5'
9085 3' -64 NC_002512.2 + 129753 0.67 0.604393
Target:  5'- cGGUccGCCGCCGuCCaCGACggUGACGGAg -3'
miRNA:   3'- uUCGcuCGGCGGC-GG-GCUG--GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 220118 0.67 0.594967
Target:  5'- -cGUGAGCCGCCaCgCgGGgCGGCGGGu -3'
miRNA:   3'- uuCGCUCGGCGGcG-GgCUgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 184539 0.67 0.594967
Target:  5'- gGGGUcAGCCgGCgGCgCgGGCCGGCGGAc -3'
miRNA:   3'- -UUCGcUCGG-CGgCG-GgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 225476 0.67 0.594967
Target:  5'- cAGC-AGCCGCCG-UCGACCGcgaucuACGGGg -3'
miRNA:   3'- uUCGcUCGGCGGCgGGCUGGC------UGCCU- -5'
9085 3' -64 NC_002512.2 + 130073 0.67 0.594967
Target:  5'- cGGUG-GCCGCCaGCUCGuaguacCCGACGGc -3'
miRNA:   3'- uUCGCuCGGCGG-CGGGCu-----GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 94677 0.67 0.604393
Target:  5'- cGGgGGGCCcCCcgGCCCG-CUGGCGGAc -3'
miRNA:   3'- uUCgCUCGGcGG--CGGGCuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 190134 0.67 0.604393
Target:  5'- -uGCGuGCUGCuCGCCUGGCCcacCGGGu -3'
miRNA:   3'- uuCGCuCGGCG-GCGGGCUGGcu-GCCU- -5'
9085 3' -64 NC_002512.2 + 111094 0.67 0.604393
Target:  5'- gGGGCccacAGCUcCCGCCCGG-CGGCGGAg -3'
miRNA:   3'- -UUCGc---UCGGcGGCGGGCUgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 145340 0.67 0.604393
Target:  5'- cGAGCGccucGCCgcGCCGCCCGacGCCGGCu-- -3'
miRNA:   3'- -UUCGCu---CGG--CGGCGGGC--UGGCUGccu -5'
9085 3' -64 NC_002512.2 + 157153 0.67 0.604393
Target:  5'- gGGGCGGGCgGCgGgCCGGgCGGCGuGGg -3'
miRNA:   3'- -UUCGCUCGgCGgCgGGCUgGCUGC-CU- -5'
9085 3' -64 NC_002512.2 + 170055 0.67 0.604393
Target:  5'- uGGCc-GCCGCCGCCgCGGCCGccuucuUGGGc -3'
miRNA:   3'- uUCGcuCGGCGGCGG-GCUGGCu-----GCCU- -5'
9085 3' -64 NC_002512.2 + 200789 0.67 0.604393
Target:  5'- uGGCc-GCCGCCGCCgaaGACgaGGCGGGa -3'
miRNA:   3'- uUCGcuCGGCGGCGGg--CUGg-CUGCCU- -5'
9085 3' -64 NC_002512.2 + 128772 0.67 0.604393
Target:  5'- -cGCGAGCgcaCGCCGCgCCGcgcGCUGGcCGGGg -3'
miRNA:   3'- uuCGCUCG---GCGGCG-GGC---UGGCU-GCCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.