miRNA display CGI


Results 121 - 140 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 5793 0.67 0.570582
Target:  5'- cGGCGuuuguuacaaaaccGCCGCCGcCCCGuuCGGCGGc -3'
miRNA:   3'- uUCGCu-------------CGGCGGC-GGGCugGCUGCCu -5'
9085 3' -64 NC_002512.2 + 78322 0.67 0.56685
Target:  5'- -uGCGAG-CGaCCGUCCgGACCG-CGGAa -3'
miRNA:   3'- uuCGCUCgGC-GGCGGG-CUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 222512 0.67 0.56685
Target:  5'- -uGCGccuGGCCGcCCGCCgCGGCCGccgucGCGGu -3'
miRNA:   3'- uuCGC---UCGGC-GGCGG-GCUGGC-----UGCCu -5'
9085 3' -64 NC_002512.2 + 99105 0.67 0.569648
Target:  5'- uGGCGAGCCcggGCCGCUccaagagaucgcgcaCGGCCGgaucgucgggggaACGGAg -3'
miRNA:   3'- uUCGCUCGG---CGGCGG---------------GCUGGC-------------UGCCU- -5'
9085 3' -64 NC_002512.2 + 148678 0.67 0.57619
Target:  5'- cAGCGGGCCGUgGCCCucgucGCCGcuucgccCGGAu -3'
miRNA:   3'- uUCGCUCGGCGgCGGGc----UGGCu------GCCU- -5'
9085 3' -64 NC_002512.2 + 218632 0.67 0.57619
Target:  5'- -cGCGucgggacccuGUCG-CGCCCGGCgGACGGAg -3'
miRNA:   3'- uuCGCu---------CGGCgGCGGGCUGgCUGCCU- -5'
9085 3' -64 NC_002512.2 + 227919 0.67 0.57619
Target:  5'- cGGaCGcGCCGCC-UCCGacGCCGGCGGAc -3'
miRNA:   3'- uUC-GCuCGGCGGcGGGC--UGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 226789 0.67 0.584625
Target:  5'- cGGGCGAcgccguggucucgGCCGCCGCCgUGGCCGcCGc- -3'
miRNA:   3'- -UUCGCU-------------CGGCGGCGG-GCUGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 211176 0.67 0.585564
Target:  5'- cGAGCGcGUCGCCGCCCuGCU--CGGGg -3'
miRNA:   3'- -UUCGCuCGGCGGCGGGcUGGcuGCCU- -5'
9085 3' -64 NC_002512.2 + 172879 0.67 0.585564
Target:  5'- cGGUcAGaCCGCCGaCCCGGCCGcccACGGc -3'
miRNA:   3'- uUCGcUC-GGCGGC-GGGCUGGC---UGCCu -5'
9085 3' -64 NC_002512.2 + 49604 0.67 0.565918
Target:  5'- aGGGCGAcgggaacGCCGCCGCCaugagGAUCGucCGGGc -3'
miRNA:   3'- -UUCGCU-------CGGCGGCGGg----CUGGCu-GCCU- -5'
9085 3' -64 NC_002512.2 + 117094 0.67 0.585564
Target:  5'- -uGCGGGCCGCCcuggaCCCGGCaCaGCGGc -3'
miRNA:   3'- uuCGCUCGGCGGc----GGGCUG-GcUGCCu -5'
9085 3' -64 NC_002512.2 + 107021 0.67 0.585564
Target:  5'- aGAGcCGGGCgCGCU-CCCGAcggaagagggacCCGACGGAg -3'
miRNA:   3'- -UUC-GCUCG-GCGGcGGGCU------------GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 97856 0.67 0.585564
Target:  5'- gAGGCGAcGaCCGagacggacCCGCCCG-CCGACGcGAg -3'
miRNA:   3'- -UUCGCU-C-GGC--------GGCGGGCuGGCUGC-CU- -5'
9085 3' -64 NC_002512.2 + 95317 0.67 0.585564
Target:  5'- -cGCGGGCCGCCGUaccggaacauguUCGGCCccaGGAa -3'
miRNA:   3'- uuCGCUCGGCGGCG------------GGCUGGcugCCU- -5'
9085 3' -64 NC_002512.2 + 217800 0.67 0.585564
Target:  5'- uGGCGGaucggcGUCGCCGuCCCGAucgUCGACGGc -3'
miRNA:   3'- uUCGCU------CGGCGGC-GGGCU---GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 130147 0.68 0.548292
Target:  5'- -cGCG-GCCGCgggGCCCGG-CGGCGGGc -3'
miRNA:   3'- uuCGCuCGGCGg--CGGGCUgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 80916 0.68 0.557549
Target:  5'- uGGUGGGUCGCgcgggCGCCCucCCGGCGGu -3'
miRNA:   3'- uUCGCUCGGCG-----GCGGGcuGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 75276 0.68 0.557549
Target:  5'- cGAGCGGGCgGCgGUUCGAaCCGAccaaucCGGAg -3'
miRNA:   3'- -UUCGCUCGgCGgCGGGCU-GGCU------GCCU- -5'
9085 3' -64 NC_002512.2 + 102606 0.68 0.557549
Target:  5'- -cGUcGGCCGCCGCCaaCGcCCGGgGGAa -3'
miRNA:   3'- uuCGcUCGGCGGCGG--GCuGGCUgCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.