miRNA display CGI


Results 41 - 60 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 58892 0.73 0.276055
Target:  5'- aAAGCG-GCgUGUCG-CCGACCGACGGAg -3'
miRNA:   3'- -UUCGCuCG-GCGGCgGGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 129196 0.73 0.300958
Target:  5'- -uGCGgaggaGGCCGCCGCCgcUGGCCG-CGGAg -3'
miRNA:   3'- uuCGC-----UCGGCGGCGG--GCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 188661 0.73 0.294574
Target:  5'- cGGCGGcCCGUCGUCCGACCGcgGCGGu -3'
miRNA:   3'- uUCGCUcGGCGGCGGGCUGGC--UGCCu -5'
9085 3' -64 NC_002512.2 + 226685 0.73 0.276055
Target:  5'- uGAGCGccgGGCCGUCGCCCGcggcggcgucgAgCGACGGGa -3'
miRNA:   3'- -UUCGC---UCGGCGGCGGGC-----------UgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 212359 0.73 0.276055
Target:  5'- aGAGCGAGCUgGCCGCCUacGCCGACGc- -3'
miRNA:   3'- -UUCGCUCGG-CGGCGGGc-UGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 122792 0.72 0.339382
Target:  5'- gAGGaCGGGCCGCCGaccgaCCCGACCgcccccgagaacgaGAUGGAg -3'
miRNA:   3'- -UUC-GCUCGGCGGC-----GGGCUGG--------------CUGCCU- -5'
9085 3' -64 NC_002512.2 + 162006 0.72 0.32756
Target:  5'- -uGCGGgauGCgGaCCGCCUGGCCGACGGc -3'
miRNA:   3'- uuCGCU---CGgC-GGCGGGCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 193896 0.72 0.348629
Target:  5'- gGAGCGGGUCGCCGC--GGUCGGCGGAu -3'
miRNA:   3'- -UUCGCUCGGCGGCGggCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 154694 0.72 0.32756
Target:  5'- --cCGAGCgGCCGUCCGGCgucgagcggcgCGACGGAa -3'
miRNA:   3'- uucGCUCGgCGGCGGGCUG-----------GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 150059 0.72 0.35151
Target:  5'- gGGGCGGgagggggggaccgccGCCGCCGCCguCGGgCGAUGGAg -3'
miRNA:   3'- -UUCGCU---------------CGGCGGCGG--GCUgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 101751 0.72 0.32756
Target:  5'- gAAGaCcAGCCGCCGCCUGACCuucggcgaGACGGc -3'
miRNA:   3'- -UUC-GcUCGGCGGCGGGCUGG--------CUGCCu -5'
9085 3' -64 NC_002512.2 + 222558 0.72 0.348629
Target:  5'- cGGCGAcccgaccgucccGCCGCgGCCCG-CCGucGCGGAg -3'
miRNA:   3'- uUCGCU------------CGGCGgCGGGCuGGC--UGCCU- -5'
9085 3' -64 NC_002512.2 + 184360 0.72 0.334477
Target:  5'- cAAGuCGccGCCGCCGCCCG-CCG-CGGGc -3'
miRNA:   3'- -UUC-GCu-CGGCGGCGGGCuGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 196693 0.72 0.3415
Target:  5'- cGAGCGGcaccGuCCGCCaGCCCGACCGGCu-- -3'
miRNA:   3'- -UUCGCU----C-GGCGG-CGGGCUGGCUGccu -5'
9085 3' -64 NC_002512.2 + 76541 0.72 0.32756
Target:  5'- cAGCGGGacCCGCCGaCCCgGACCGgcccaGCGGAa -3'
miRNA:   3'- uUCGCUC--GGCGGC-GGG-CUGGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 133657 0.72 0.307449
Target:  5'- gGGGCGGucgccGCCGCCGCCgCGGCCGcCGuGGc -3'
miRNA:   3'- -UUCGCU-----CGGCGGCGG-GCUGGCuGC-CU- -5'
9085 3' -64 NC_002512.2 + 41110 0.72 0.3415
Target:  5'- gAGGCcgGAGCCGCCGCCgGaACCGcccuUGGAc -3'
miRNA:   3'- -UUCG--CUCGGCGGCGGgC-UGGCu---GCCU- -5'
9085 3' -64 NC_002512.2 + 137227 0.72 0.348629
Target:  5'- -cGCGGGCgGCCGuCCCGGauCCGcGCGGGu -3'
miRNA:   3'- uuCGCUCGgCGGC-GGGCU--GGC-UGCCU- -5'
9085 3' -64 NC_002512.2 + 62463 0.72 0.348629
Target:  5'- cAGGCGuGCCGCCGCacgaGAUCGACGc- -3'
miRNA:   3'- -UUCGCuCGGCGGCGgg--CUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 155275 0.72 0.348629
Target:  5'- -cGgGAGCCgagGCgGCUCGAgCCGACGGAg -3'
miRNA:   3'- uuCgCUCGG---CGgCGGGCU-GGCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.