miRNA display CGI


Results 61 - 80 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 76541 0.72 0.32756
Target:  5'- cAGCGGGacCCGCCGaCCCgGACCGgcccaGCGGAa -3'
miRNA:   3'- uUCGCUC--GGCGGC-GGG-CUGGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 184360 0.72 0.334477
Target:  5'- cAAGuCGccGCCGCCGCCCG-CCG-CGGGc -3'
miRNA:   3'- -UUC-GCu-CGGCGGCGGGCuGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 205038 0.72 0.307449
Target:  5'- -cGCGuccGCCGCCGaCCGGCCG-CGGGc -3'
miRNA:   3'- uuCGCu--CGGCGGCgGGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 222558 0.72 0.348629
Target:  5'- cGGCGAcccgaccgucccGCCGCgGCCCG-CCGucGCGGAg -3'
miRNA:   3'- uUCGCU------------CGGCGgCGGGCuGGC--UGCCU- -5'
9085 3' -64 NC_002512.2 + 133657 0.72 0.307449
Target:  5'- gGGGCGGucgccGCCGCCGCCgCGGCCGcCGuGGc -3'
miRNA:   3'- -UUCGCU-----CGGCGGCGG-GCUGGCuGC-CU- -5'
9085 3' -64 NC_002512.2 + 186458 0.71 0.385844
Target:  5'- -cGaCGAcGCCuccguGCUGCUCGGCCGGCGGAu -3'
miRNA:   3'- uuC-GCU-CGG-----CGGCGGGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 143552 0.71 0.363203
Target:  5'- cGGCG-GCCGCgCGUCUccccgcgggcgGGCCGGCGGAg -3'
miRNA:   3'- uUCGCuCGGCG-GCGGG-----------CUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 116683 0.71 0.393595
Target:  5'- -cGCGAGCCGCUGgCCGacGCCGcucUGGAa -3'
miRNA:   3'- uuCGCUCGGCGGCgGGC--UGGCu--GCCU- -5'
9085 3' -64 NC_002512.2 + 123666 0.71 0.385844
Target:  5'- -cGCGcGCgCGCCGCCaUGGCCG-CGGAc -3'
miRNA:   3'- uuCGCuCG-GCGGCGG-GCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 214233 0.71 0.377435
Target:  5'- cAGGCGgcucgucGGCuCGCCGCCCGcgGCCGA-GGAg -3'
miRNA:   3'- -UUCGC-------UCG-GCGGCGGGC--UGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 217493 0.71 0.370647
Target:  5'- cGGCGccgccGCCGCCGCCCGAaggCGAgcuCGGGg -3'
miRNA:   3'- uUCGCu----CGGCGGCGGGCUg--GCU---GCCU- -5'
9085 3' -64 NC_002512.2 + 4910 0.71 0.369897
Target:  5'- aGGGCGccgccGCCGCCGCCCaGCggguagaCGGCGGAg -3'
miRNA:   3'- -UUCGCu----CGGCGGCGGGcUG-------GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 41236 0.71 0.378194
Target:  5'- -cGaCGGGCCGCCGCCgCcGCCGGCGc- -3'
miRNA:   3'- uuC-GCUCGGCGGCGG-GcUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 75568 0.71 0.378194
Target:  5'- gGGGCgGGGCCGCCGCCgucgcgguCGACgUGGCGGc -3'
miRNA:   3'- -UUCG-CUCGGCGGCGG--------GCUG-GCUGCCu -5'
9085 3' -64 NC_002512.2 + 83170 0.71 0.378194
Target:  5'- -cGCG-GCCGCCGCCCcGCCGuCGu- -3'
miRNA:   3'- uuCGCuCGGCGGCGGGcUGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 15656 0.71 0.393595
Target:  5'- cGGCGAGCCgacgaGCCGCCUGAcgucCCGgggcaGCGGGc -3'
miRNA:   3'- uUCGCUCGG-----CGGCGGGCU----GGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 128273 0.71 0.370647
Target:  5'- -cGCGucCCGgCGCCgGGCCGACGGc -3'
miRNA:   3'- uuCGCucGGCgGCGGgCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 4083 0.71 0.355863
Target:  5'- cAGGCcacccGGCCGCCcgcgGCCCGGCCGGCGc- -3'
miRNA:   3'- -UUCGc----UCGGCGG----CGGGCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 195034 0.71 0.378194
Target:  5'- cGGCGAcgaagaagccGCCGCgGCCCG-CgGGCGGGa -3'
miRNA:   3'- uUCGCU----------CGGCGgCGGGCuGgCUGCCU- -5'
9085 3' -64 NC_002512.2 + 121970 0.71 0.378194
Target:  5'- --cCGGGUCcCCGCCCG-CCGGCGGGa -3'
miRNA:   3'- uucGCUCGGcGGCGGGCuGGCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.