miRNA display CGI


Results 81 - 100 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 214233 0.71 0.377435
Target:  5'- cAGGCGgcucgucGGCuCGCCGCCCGcgGCCGA-GGAg -3'
miRNA:   3'- -UUCGC-------UCG-GCGGCGGGC--UGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 121970 0.71 0.378194
Target:  5'- --cCGGGUCcCCGCCCG-CCGGCGGGa -3'
miRNA:   3'- uucGCUCGGcGGCGGGCuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 217493 0.71 0.370647
Target:  5'- cGGCGccgccGCCGCCGCCCGAaggCGAgcuCGGGg -3'
miRNA:   3'- uUCGCu----CGGCGGCGGGCUg--GCU---GCCU- -5'
9085 3' -64 NC_002512.2 + 186458 0.71 0.385844
Target:  5'- -cGaCGAcGCCuccguGCUGCUCGGCCGGCGGAu -3'
miRNA:   3'- uuC-GCU-CGG-----CGGCGGGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 133233 0.71 0.385844
Target:  5'- gAGGUGAcgGCCGgcCCGUCCGAucCCGGCGGGg -3'
miRNA:   3'- -UUCGCU--CGGC--GGCGGGCU--GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 129654 0.7 0.433826
Target:  5'- -cGCG-GUCGCCGCCCG-UCGACGc- -3'
miRNA:   3'- uuCGCuCGGCGGCGGGCuGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 95117 0.7 0.425589
Target:  5'- cGGCGGGcCCGCCGacgaaCCGGacgguccgccCCGGCGGGu -3'
miRNA:   3'- uUCGCUC-GGCGGCg----GGCU----------GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 129827 0.7 0.433826
Target:  5'- -cGuCGGcGCCGCCGCCCccgcgucucagcGcCCGGCGGAg -3'
miRNA:   3'- uuC-GCU-CGGCGGCGGG------------CuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 119380 0.7 0.425589
Target:  5'- cGGCGcgcGGCCGCaaCCCGaacaugacGCCGACGGAg -3'
miRNA:   3'- uUCGC---UCGGCGgcGGGC--------UGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 112899 0.7 0.425589
Target:  5'- -uGCG-GCCGUCgGCCCGcCCGgACGGGg -3'
miRNA:   3'- uuCGCuCGGCGG-CGGGCuGGC-UGCCU- -5'
9085 3' -64 NC_002512.2 + 116970 0.7 0.442156
Target:  5'- --cCGGGCCGCCgacGCCCcguccgggcgGGCCGACGGc -3'
miRNA:   3'- uucGCUCGGCGG---CGGG----------CUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 60888 0.7 0.433826
Target:  5'- -cGcCGAGCCGgCGCgCGACCGcucggucgaGCGGAc -3'
miRNA:   3'- uuC-GCUCGGCgGCGgGCUGGC---------UGCCU- -5'
9085 3' -64 NC_002512.2 + 55031 0.7 0.442156
Target:  5'- aGAGCcGGUCggGCCGCCU-ACCGACGGGa -3'
miRNA:   3'- -UUCGcUCGG--CGGCGGGcUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 96944 0.7 0.442156
Target:  5'- cAGCGGGgCGUCGCgCCGACCGuCGu- -3'
miRNA:   3'- uUCGCUCgGCGGCG-GGCUGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 60810 0.7 0.450575
Target:  5'- -cGCGGGCCGCgaCGCCgCcGCCG-CGGAg -3'
miRNA:   3'- uuCGCUCGGCG--GCGG-GcUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 137798 0.7 0.433826
Target:  5'- cGGCGGGCCGCgCGUCCGGCgGcCGu- -3'
miRNA:   3'- uUCGCUCGGCG-GCGGGCUGgCuGCcu -5'
9085 3' -64 NC_002512.2 + 131071 0.7 0.450575
Target:  5'- gAGGcCGAuCCGUCGCuCCGGCCGcCGGGg -3'
miRNA:   3'- -UUC-GCUcGGCGGCG-GGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 71015 0.7 0.401447
Target:  5'- cGGgGGGCCGCCG-CCGGCCGGuCGa- -3'
miRNA:   3'- uUCgCUCGGCGGCgGGCUGGCU-GCcu -5'
9085 3' -64 NC_002512.2 + 224253 0.7 0.433826
Target:  5'- gAGGCGGGUCGgCGCCCGAcgcCCG-CGaGAg -3'
miRNA:   3'- -UUCGCUCGGCgGCGGGCU---GGCuGC-CU- -5'
9085 3' -64 NC_002512.2 + 153248 0.7 0.450575
Target:  5'- gAAGCGAGCCGggagaCGAUCGACGGAu -3'
miRNA:   3'- -UUCGCUCGGCggcggGCUGGCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.