miRNA display CGI


Results 101 - 120 of 327 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 190433 0.7 0.442156
Target:  5'- gGAGCGGGCCGUCa-CCGACCGggACGuGAc -3'
miRNA:   3'- -UUCGCUCGGCGGcgGGCUGGC--UGC-CU- -5'
9085 3' -64 NC_002512.2 + 126416 0.7 0.450575
Target:  5'- -cGuCGAcGCCGCCucuccuccucccGCCCGGCCGGCGa- -3'
miRNA:   3'- uuC-GCU-CGGCGG------------CGGGCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 137881 0.7 0.450575
Target:  5'- -cGCGAGuCCGCCGCCggCGAC--GCGGGa -3'
miRNA:   3'- uuCGCUC-GGCGGCGG--GCUGgcUGCCU- -5'
9085 3' -64 NC_002512.2 + 75895 0.7 0.451422
Target:  5'- cGGCGucgcucuuucuguuuGCCGCCGCCgGcGCCGcCGGAc -3'
miRNA:   3'- uUCGCu--------------CGGCGGCGGgC-UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 99036 0.7 0.442156
Target:  5'- -uGgGGGCC-UCGCCCGACCGcCGGu -3'
miRNA:   3'- uuCgCUCGGcGGCGGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 224253 0.7 0.433826
Target:  5'- gAGGCGGGUCGgCGCCCGAcgcCCG-CGaGAg -3'
miRNA:   3'- -UUCGCUCGGCgGCGGGCU---GGCuGC-CU- -5'
9085 3' -64 NC_002512.2 + 93712 0.7 0.417445
Target:  5'- cGGCGAccccGCCGCgCGgCgGAUCGACGGGg -3'
miRNA:   3'- uUCGCU----CGGCG-GCgGgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 112899 0.7 0.425589
Target:  5'- -uGCG-GCCGUCgGCCCGcCCGgACGGGg -3'
miRNA:   3'- uuCGCuCGGCGG-CGGGCuGGC-UGCCU- -5'
9085 3' -64 NC_002512.2 + 27845 0.7 0.425589
Target:  5'- -cGCGAcacGaCCGCgaGCCgGACCGGCGGGg -3'
miRNA:   3'- uuCGCU---C-GGCGg-CGGgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 145254 0.7 0.417445
Target:  5'- --cUGGGCCGCCGCCUGGaCGACGa- -3'
miRNA:   3'- uucGCUCGGCGGCGGGCUgGCUGCcu -5'
9085 3' -64 NC_002512.2 + 129654 0.7 0.433826
Target:  5'- -cGCG-GUCGCCGCCCG-UCGACGc- -3'
miRNA:   3'- uuCGCuCGGCGGCGGGCuGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 60810 0.7 0.450575
Target:  5'- -cGCGGGCCGCgaCGCCgCcGCCG-CGGAg -3'
miRNA:   3'- uuCGCUCGGCG--GCGG-GcUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 131071 0.7 0.450575
Target:  5'- gAGGcCGAuCCGUCGCuCCGGCCGcCGGGg -3'
miRNA:   3'- -UUC-GCUcGGCGGCG-GGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 210518 0.7 0.409397
Target:  5'- cGAGCGcgaGGCCGCCgaGCCC--CCGACGGu -3'
miRNA:   3'- -UUCGC---UCGGCGG--CGGGcuGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 153248 0.7 0.450575
Target:  5'- gAAGCGAGCCGggagaCGAUCGACGGAu -3'
miRNA:   3'- -UUCGCUCGGCggcggGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 158850 0.7 0.450575
Target:  5'- gGAGCGGggggacgucGUCGUCGaCCGGCCGGCGGc -3'
miRNA:   3'- -UUCGCU---------CGGCGGCgGGCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 95117 0.7 0.425589
Target:  5'- cGGCGGGcCCGCCGacgaaCCGGacgguccgccCCGGCGGGu -3'
miRNA:   3'- uUCGCUC-GGCGGCg----GGCU----------GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 129827 0.7 0.433826
Target:  5'- -cGuCGGcGCCGCCGCCCccgcgucucagcGcCCGGCGGAg -3'
miRNA:   3'- uuC-GCU-CGGCGGCGGG------------CuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 184581 0.69 0.49304
Target:  5'- -cGCGGGCCGgcagggcggcgguCCGUCCGACCcGCGaGAc -3'
miRNA:   3'- uuCGCUCGGC-------------GGCGGGCUGGcUGC-CU- -5'
9085 3' -64 NC_002512.2 + 4161 0.69 0.467672
Target:  5'- uGAGCGAGUCGCCGC--GGCUcGCGGGc -3'
miRNA:   3'- -UUCGCUCGGCGGCGggCUGGcUGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.