miRNA display CGI


Results 121 - 140 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 206869 0.69 0.485098
Target:  5'- gGGGCGGcGCCGa-GCUCG-CCGACGGGu -3'
miRNA:   3'- -UUCGCU-CGGCggCGGGCuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 227671 0.69 0.491269
Target:  5'- aGAGCGGcGgCGCCGCCggCGACCGagacgacgacggcgGCGGGg -3'
miRNA:   3'- -UUCGCU-CgGCGGCGG--GCUGGC--------------UGCCU- -5'
9085 3' -64 NC_002512.2 + 10464 0.69 0.459081
Target:  5'- gAGGCc-GCCGCCGcCCCGGgCGugGGc -3'
miRNA:   3'- -UUCGcuCGGCGGC-GGGCUgGCugCCu -5'
9085 3' -64 NC_002512.2 + 37269 0.69 0.459081
Target:  5'- aAGGUGAggccGCCGUCGCCCG-CCG-CGGc -3'
miRNA:   3'- -UUCGCU----CGGCGGCGGGCuGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 198300 0.69 0.493926
Target:  5'- gGAGCGGGCCG-CGCCCucuaggaucaGGCCGuucACGGc -3'
miRNA:   3'- -UUCGCUCGGCgGCGGG----------CUGGC---UGCCu -5'
9085 3' -64 NC_002512.2 + 218493 0.69 0.493926
Target:  5'- -cGCGGGUCGuCCGCguCCGAgCCGuCGGAc -3'
miRNA:   3'- uuCGCUCGGC-GGCG--GGCU-GGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 91869 0.69 0.493926
Target:  5'- --cCGAgGCCGCCGUCCGGCgcgggCGGCGGc -3'
miRNA:   3'- uucGCU-CGGCGGCGGGCUG-----GCUGCCu -5'
9085 3' -64 NC_002512.2 + 184581 0.69 0.49304
Target:  5'- -cGCGGGCCGgcagggcggcgguCCGUCCGACCcGCGaGAc -3'
miRNA:   3'- uuCGCUCGGC-------------GGCGGGCUGGcUGC-CU- -5'
9085 3' -64 NC_002512.2 + 150281 0.69 0.485098
Target:  5'- -cGCGAcccggcGCUGCCGCCCGcgaagaGGCGGAg -3'
miRNA:   3'- uuCGCU------CGGCGGCGGGCugg---CUGCCU- -5'
9085 3' -64 NC_002512.2 + 156490 0.69 0.467672
Target:  5'- cGGCGGGCUgggcggacacgGCgGCCUGGgCGGCGGGg -3'
miRNA:   3'- uUCGCUCGG-----------CGgCGGGCUgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 98130 0.69 0.485098
Target:  5'- gGGGCGcuggucgucGCgGCCGCCCGccCCGGCGGu -3'
miRNA:   3'- -UUCGCu--------CGgCGGCGGGCu-GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 110509 0.69 0.484219
Target:  5'- cAGCaGGGCCGCCGCgucguccaccaucCCG-CgGGCGGAg -3'
miRNA:   3'- uUCG-CUCGGCGGCG-------------GGCuGgCUGCCU- -5'
9085 3' -64 NC_002512.2 + 74402 0.69 0.475474
Target:  5'- aGAGCGgcGGCCaugGCCGUcucuucuUCGACCGACGGu -3'
miRNA:   3'- -UUCGC--UCGG---CGGCG-------GGCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 222608 0.69 0.467672
Target:  5'- cGGCccccgGGGCCuCgCGCCCGAucCCGACGGAc -3'
miRNA:   3'- uUCG-----CUCGGcG-GCGGGCU--GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 149008 0.69 0.467672
Target:  5'- cGGgGGGCCGCCGCggaCCGcCCGACa-- -3'
miRNA:   3'- uUCgCUCGGCGGCG---GGCuGGCUGccu -5'
9085 3' -64 NC_002512.2 + 96645 0.69 0.466809
Target:  5'- -cGCGAccggggcGCCGCCGCCCucCCGuccucgcuggGCGGAc -3'
miRNA:   3'- uuCGCU-------CGGCGGCGGGcuGGC----------UGCCU- -5'
9085 3' -64 NC_002512.2 + 184968 0.69 0.459081
Target:  5'- gGAGCGcGuCCGCCGCgCGGCCGucgacgUGGAg -3'
miRNA:   3'- -UUCGCuC-GGCGGCGgGCUGGCu-----GCCU- -5'
9085 3' -64 NC_002512.2 + 2272 0.69 0.484219
Target:  5'- -cGCc-GCCGCCGCCCGcccuccgGCCGcuGCGGGu -3'
miRNA:   3'- uuCGcuCGGCGGCGGGC-------UGGC--UGCCU- -5'
9085 3' -64 NC_002512.2 + 12422 0.69 0.476346
Target:  5'- -cGCGAGCuCGCCGCgCGcgaGGCGGGa -3'
miRNA:   3'- uuCGCUCG-GCGGCGgGCuggCUGCCU- -5'
9085 3' -64 NC_002512.2 + 4161 0.69 0.467672
Target:  5'- uGAGCGAGUCGCCGC--GGCUcGCGGGc -3'
miRNA:   3'- -UUCGCUCGGCGGCGggCUGGcUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.