miRNA display CGI


Results 141 - 160 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 147850 0.69 0.459081
Target:  5'- -cGCGAccGCCGCCGgcgcgaccccgaCCCGGgCGACGGc -3'
miRNA:   3'- uuCGCU--CGGCGGC------------GGGCUgGCUGCCu -5'
9085 3' -64 NC_002512.2 + 149008 0.69 0.467672
Target:  5'- cGGgGGGCCGCCGCggaCCGcCCGACa-- -3'
miRNA:   3'- uUCgCUCGGCGGCG---GGCuGGCUGccu -5'
9085 3' -64 NC_002512.2 + 104872 0.69 0.476346
Target:  5'- cAGCGGGCggCGCCGa-CGGCgCGACGGGg -3'
miRNA:   3'- uUCGCUCG--GCGGCggGCUG-GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 79142 0.69 0.502827
Target:  5'- cGGGUcuGGGCCG-CGCgCgGGCCGACGGGa -3'
miRNA:   3'- -UUCG--CUCGGCgGCG-GgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 42572 0.69 0.493926
Target:  5'- cGGGCGGG-CGCCGCgaggCGAgCGGCGGGg -3'
miRNA:   3'- -UUCGCUCgGCGGCGg---GCUgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 139257 0.69 0.493926
Target:  5'- cGGCGccgGGUcgCGCCGCCCGGCgCG-CGGGg -3'
miRNA:   3'- uUCGC---UCG--GCGGCGGGCUG-GCuGCCU- -5'
9085 3' -64 NC_002512.2 + 129876 0.69 0.49304
Target:  5'- cGGCGGgggauucGCCGUCGCCCucGCCGACGa- -3'
miRNA:   3'- uUCGCU-------CGGCGGCGGGc-UGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 123930 0.69 0.485098
Target:  5'- cGGCGGGCUgGCCGUCagacucguGCCGGCGGGa -3'
miRNA:   3'- uUCGCUCGG-CGGCGGgc------UGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 2272 0.69 0.484219
Target:  5'- -cGCc-GCCGCCGCCCGcccuccgGCCGcuGCGGGu -3'
miRNA:   3'- uuCGcuCGGCGGCGGGC-------UGGC--UGCCU- -5'
9085 3' -64 NC_002512.2 + 102606 0.68 0.557549
Target:  5'- -cGUcGGCCGCCGCCaaCGcCCGGgGGAa -3'
miRNA:   3'- uuCGcUCGGCGGCGG--GCuGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 75276 0.68 0.557549
Target:  5'- cGAGCGGGCgGCgGUUCGAaCCGAccaaucCGGAg -3'
miRNA:   3'- -UUCGCUCGgCGgCGGGCU-GGCU------GCCU- -5'
9085 3' -64 NC_002512.2 + 80916 0.68 0.557549
Target:  5'- uGGUGGGUCGCgcgggCGCCCucCCGGCGGu -3'
miRNA:   3'- uUCGCUCGGCG-----GCGGGcuGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 130147 0.68 0.548292
Target:  5'- -cGCG-GCCGCgggGCCCGG-CGGCGGGc -3'
miRNA:   3'- uuCGCuCGGCGg--CGGGCUgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 28524 0.68 0.548292
Target:  5'- gGGGUGAgcugucggguccGCCGCCGCCCGaugucggccacGCUGACGu- -3'
miRNA:   3'- -UUCGCU------------CGGCGGCGGGC-----------UGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 1302 0.68 0.548292
Target:  5'- cGGCGccuGCCGCCGacaCGACCG-CGGu -3'
miRNA:   3'- uUCGCu--CGGCGGCgg-GCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 29959 0.68 0.548292
Target:  5'- cGGUGAGCgGCgG-CCGGCCGcgaACGGAc -3'
miRNA:   3'- uUCGCUCGgCGgCgGGCUGGC---UGCCU- -5'
9085 3' -64 NC_002512.2 + 12306 0.68 0.548292
Target:  5'- gAGGCG-G-CGCCGCCgGACCGGCu-- -3'
miRNA:   3'- -UUCGCuCgGCGGCGGgCUGGCUGccu -5'
9085 3' -64 NC_002512.2 + 123097 0.68 0.542762
Target:  5'- cGAGCGGGuccggcggaaccgucCCGCCGCCgucggCGGCCGuccCGGGg -3'
miRNA:   3'- -UUCGCUC---------------GGCGGCGG-----GCUGGCu--GCCU- -5'
9085 3' -64 NC_002512.2 + 154148 0.68 0.52993
Target:  5'- -cGCGcucGGUCGCCuCCCGuuCGGCGGAc -3'
miRNA:   3'- uuCGC---UCGGCGGcGGGCugGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 119408 0.68 0.511797
Target:  5'- -cGCGuGCCGCUGCUCGggagcguggACCG-CGGGg -3'
miRNA:   3'- uuCGCuCGGCGGCGGGC---------UGGCuGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.