miRNA display CGI


Results 81 - 100 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 123666 0.71 0.385844
Target:  5'- -cGCGcGCgCGCCGCCaUGGCCG-CGGAc -3'
miRNA:   3'- uuCGCuCG-GCGGCGG-GCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 133233 0.71 0.385844
Target:  5'- gAGGUGAcgGCCGgcCCGUCCGAucCCGGCGGGg -3'
miRNA:   3'- -UUCGCU--CGGC--GGCGGGCU--GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 186458 0.71 0.385844
Target:  5'- -cGaCGAcGCCuccguGCUGCUCGGCCGGCGGAu -3'
miRNA:   3'- uuC-GCU-CGG-----CGGCGGGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 116683 0.71 0.393595
Target:  5'- -cGCGAGCCGCUGgCCGacGCCGcucUGGAa -3'
miRNA:   3'- uuCGCUCGGCGGCgGGC--UGGCu--GCCU- -5'
9085 3' -64 NC_002512.2 + 15656 0.71 0.393595
Target:  5'- cGGCGAGCCgacgaGCCGCCUGAcgucCCGgggcaGCGGGc -3'
miRNA:   3'- uUCGCUCGG-----CGGCGGGCU----GGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 118900 0.7 0.401447
Target:  5'- cGAGCGGGCgGCCucgGUCC-ACCGGCGGc -3'
miRNA:   3'- -UUCGCUCGgCGG---CGGGcUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 45250 0.7 0.401447
Target:  5'- -cGCGGacucGCCGUCGgCCG-CCGGCGGGg -3'
miRNA:   3'- uuCGCU----CGGCGGCgGGCuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 71015 0.7 0.401447
Target:  5'- cGGgGGGCCGCCG-CCGGCCGGuCGa- -3'
miRNA:   3'- uUCgCUCGGCGGCgGGCUGGCU-GCcu -5'
9085 3' -64 NC_002512.2 + 25221 0.7 0.408598
Target:  5'- gGAGCGAGCCGCCGgcgauccCCCGcgcgucGCCGuccCGGu -3'
miRNA:   3'- -UUCGCUCGGCGGC-------GGGC------UGGCu--GCCu -5'
9085 3' -64 NC_002512.2 + 137265 0.7 0.409397
Target:  5'- cGGCG-GCCGCCGUCCGuCCGuCGu- -3'
miRNA:   3'- uUCGCuCGGCGGCGGGCuGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 210518 0.7 0.409397
Target:  5'- cGAGCGcgaGGCCGCCgaGCCC--CCGACGGu -3'
miRNA:   3'- -UUCGC---UCGGCGG--CGGGcuGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 93712 0.7 0.417445
Target:  5'- cGGCGAccccGCCGCgCGgCgGAUCGACGGGg -3'
miRNA:   3'- uUCGCU----CGGCG-GCgGgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 145254 0.7 0.417445
Target:  5'- --cUGGGCCGCCGCCUGGaCGACGa- -3'
miRNA:   3'- uucGCUCGGCGGCGGGCUgGCUGCcu -5'
9085 3' -64 NC_002512.2 + 112081 0.7 0.425589
Target:  5'- -cGCGAGcCCGUCGCCUGGCgGACc-- -3'
miRNA:   3'- uuCGCUC-GGCGGCGGGCUGgCUGccu -5'
9085 3' -64 NC_002512.2 + 95117 0.7 0.425589
Target:  5'- cGGCGGGcCCGCCGacgaaCCGGacgguccgccCCGGCGGGu -3'
miRNA:   3'- uUCGCUC-GGCGGCg----GGCU----------GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 119380 0.7 0.425589
Target:  5'- cGGCGcgcGGCCGCaaCCCGaacaugacGCCGACGGAg -3'
miRNA:   3'- uUCGC---UCGGCGgcGGGC--------UGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 81793 0.7 0.425589
Target:  5'- cGGCGccGCCGCCGCC--GCCGGgGGAc -3'
miRNA:   3'- uUCGCu-CGGCGGCGGgcUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 27845 0.7 0.425589
Target:  5'- -cGCGAcacGaCCGCgaGCCgGACCGGCGGGg -3'
miRNA:   3'- uuCGCU---C-GGCGg-CGGgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 112899 0.7 0.425589
Target:  5'- -uGCG-GCCGUCgGCCCGcCCGgACGGGg -3'
miRNA:   3'- uuCGCuCGGCGG-CGGGCuGGC-UGCCU- -5'
9085 3' -64 NC_002512.2 + 137798 0.7 0.433826
Target:  5'- cGGCGGGCCGCgCGUCCGGCgGcCGu- -3'
miRNA:   3'- uUCGCUCGGCG-GCGGGCUGgCuGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.