miRNA display CGI


Results 101 - 120 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 224253 0.7 0.433826
Target:  5'- gAGGCGGGUCGgCGCCCGAcgcCCG-CGaGAg -3'
miRNA:   3'- -UUCGCUCGGCgGCGGGCU---GGCuGC-CU- -5'
9085 3' -64 NC_002512.2 + 129654 0.7 0.433826
Target:  5'- -cGCG-GUCGCCGCCCG-UCGACGc- -3'
miRNA:   3'- uuCGCuCGGCGGCGGGCuGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 129827 0.7 0.433826
Target:  5'- -cGuCGGcGCCGCCGCCCccgcgucucagcGcCCGGCGGAg -3'
miRNA:   3'- uuC-GCU-CGGCGGCGGG------------CuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 44979 0.7 0.433826
Target:  5'- cGGCGAaggggcaguagcGCCGCCGCCCG-CUGACc-- -3'
miRNA:   3'- uUCGCU------------CGGCGGCGGGCuGGCUGccu -5'
9085 3' -64 NC_002512.2 + 137798 0.7 0.433826
Target:  5'- cGGCGGGCCGCgCGUCCGGCgGcCGu- -3'
miRNA:   3'- uUCGCUCGGCG-GCGGGCUGgCuGCcu -5'
9085 3' -64 NC_002512.2 + 112569 0.7 0.433826
Target:  5'- cAGCGGGaacCCGCCGUCCGuCCGgugguaguGCGGGa -3'
miRNA:   3'- uUCGCUC---GGCGGCGGGCuGGC--------UGCCU- -5'
9085 3' -64 NC_002512.2 + 99036 0.7 0.442156
Target:  5'- -uGgGGGCC-UCGCCCGACCGcCGGu -3'
miRNA:   3'- uuCgCUCGGcGGCGGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 55031 0.7 0.442156
Target:  5'- aGAGCcGGUCggGCCGCCU-ACCGACGGGa -3'
miRNA:   3'- -UUCGcUCGG--CGGCGGGcUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 96944 0.7 0.442156
Target:  5'- cAGCGGGgCGUCGCgCCGACCGuCGu- -3'
miRNA:   3'- uUCGCUCgGCGGCG-GGCUGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 116970 0.7 0.442156
Target:  5'- --cCGGGCCGCCgacGCCCcguccgggcgGGCCGACGGc -3'
miRNA:   3'- uucGCUCGGCGG---CGGG----------CUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 190433 0.7 0.442156
Target:  5'- gGAGCGGGCCGUCa-CCGACCGggACGuGAc -3'
miRNA:   3'- -UUCGCUCGGCGGcgGGCUGGC--UGC-CU- -5'
9085 3' -64 NC_002512.2 + 158850 0.7 0.450575
Target:  5'- gGAGCGGggggacgucGUCGUCGaCCGGCCGGCGGc -3'
miRNA:   3'- -UUCGCU---------CGGCGGCgGGCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 60810 0.7 0.450575
Target:  5'- -cGCGGGCCGCgaCGCCgCcGCCG-CGGAg -3'
miRNA:   3'- uuCGCUCGGCG--GCGG-GcUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 126416 0.7 0.450575
Target:  5'- -cGuCGAcGCCGCCucuccuccucccGCCCGGCCGGCGa- -3'
miRNA:   3'- uuC-GCU-CGGCGG------------CGGGCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 137881 0.7 0.450575
Target:  5'- -cGCGAGuCCGCCGCCggCGAC--GCGGGa -3'
miRNA:   3'- uuCGCUC-GGCGGCGG--GCUGgcUGCCU- -5'
9085 3' -64 NC_002512.2 + 153248 0.7 0.450575
Target:  5'- gAAGCGAGCCGggagaCGAUCGACGGAu -3'
miRNA:   3'- -UUCGCUCGGCggcggGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 131071 0.7 0.450575
Target:  5'- gAGGcCGAuCCGUCGCuCCGGCCGcCGGGg -3'
miRNA:   3'- -UUC-GCUcGGCGGCG-GGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 75895 0.7 0.451422
Target:  5'- cGGCGucgcucuuucuguuuGCCGCCGCCgGcGCCGcCGGAc -3'
miRNA:   3'- uUCGCu--------------CGGCGGCGGgC-UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 37269 0.69 0.459081
Target:  5'- aAGGUGAggccGCCGUCGCCCG-CCG-CGGc -3'
miRNA:   3'- -UUCGCU----CGGCGGCGGGCuGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 10464 0.69 0.459081
Target:  5'- gAGGCc-GCCGCCGcCCCGGgCGugGGc -3'
miRNA:   3'- -UUCGcuCGGCGGC-GGGCUgGCugCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.