Results 121 - 140 of 327 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
9085 | 3' | -64 | NC_002512.2 | + | 105014 | 0.69 | 0.459081 |
Target: 5'- ---gGGGCCGCCGCCCGGuucUCGucCGGGu -3' miRNA: 3'- uucgCUCGGCGGCGGGCU---GGCu-GCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 37269 | 0.69 | 0.459081 |
Target: 5'- aAGGUGAggccGCCGUCGCCCG-CCG-CGGc -3' miRNA: 3'- -UUCGCU----CGGCGGCGGGCuGGCuGCCu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 45294 | 0.69 | 0.459081 |
Target: 5'- -cGCGGGucggacggaCCGCCGCCCuGCCGgcccGCGGGu -3' miRNA: 3'- uuCGCUC---------GGCGGCGGGcUGGC----UGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 147850 | 0.69 | 0.459081 |
Target: 5'- -cGCGAccGCCGCCGgcgcgaccccgaCCCGGgCGACGGc -3' miRNA: 3'- uuCGCU--CGGCGGC------------GGGCUgGCUGCCu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 96645 | 0.69 | 0.466809 |
Target: 5'- -cGCGAccggggcGCCGCCGCCCucCCGuccucgcuggGCGGAc -3' miRNA: 3'- uuCGCU-------CGGCGGCGGGcuGGC----------UGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 4161 | 0.69 | 0.467672 |
Target: 5'- uGAGCGAGUCGCCGC--GGCUcGCGGGc -3' miRNA: 3'- -UUCGCUCGGCGGCGggCUGGcUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 156490 | 0.69 | 0.467672 |
Target: 5'- cGGCGGGCUgggcggacacgGCgGCCUGGgCGGCGGGg -3' miRNA: 3'- uUCGCUCGG-----------CGgCGGGCUgGCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 222608 | 0.69 | 0.467672 |
Target: 5'- cGGCccccgGGGCCuCgCGCCCGAucCCGACGGAc -3' miRNA: 3'- uUCG-----CUCGGcG-GCGGGCU--GGCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 149008 | 0.69 | 0.467672 |
Target: 5'- cGGgGGGCCGCCGCggaCCGcCCGACa-- -3' miRNA: 3'- uUCgCUCGGCGGCG---GGCuGGCUGccu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 74402 | 0.69 | 0.475474 |
Target: 5'- aGAGCGgcGGCCaugGCCGUcucuucuUCGACCGACGGu -3' miRNA: 3'- -UUCGC--UCGG---CGGCG-------GGCUGGCUGCCu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 104872 | 0.69 | 0.476346 |
Target: 5'- cAGCGGGCggCGCCGa-CGGCgCGACGGGg -3' miRNA: 3'- uUCGCUCG--GCGGCggGCUG-GCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 12422 | 0.69 | 0.476346 |
Target: 5'- -cGCGAGCuCGCCGCgCGcgaGGCGGGa -3' miRNA: 3'- uuCGCUCG-GCGGCGgGCuggCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 2272 | 0.69 | 0.484219 |
Target: 5'- -cGCc-GCCGCCGCCCGcccuccgGCCGcuGCGGGu -3' miRNA: 3'- uuCGcuCGGCGGCGGGC-------UGGC--UGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 110509 | 0.69 | 0.484219 |
Target: 5'- cAGCaGGGCCGCCGCgucguccaccaucCCG-CgGGCGGAg -3' miRNA: 3'- uUCG-CUCGGCGGCG-------------GGCuGgCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 123930 | 0.69 | 0.485098 |
Target: 5'- cGGCGGGCUgGCCGUCagacucguGCCGGCGGGa -3' miRNA: 3'- uUCGCUCGG-CGGCGGgc------UGGCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 98130 | 0.69 | 0.485098 |
Target: 5'- gGGGCGcuggucgucGCgGCCGCCCGccCCGGCGGu -3' miRNA: 3'- -UUCGCu--------CGgCGGCGGGCu-GGCUGCCu -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 206869 | 0.69 | 0.485098 |
Target: 5'- gGGGCGGcGCCGa-GCUCG-CCGACGGGu -3' miRNA: 3'- -UUCGCU-CGGCggCGGGCuGGCUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 150281 | 0.69 | 0.485098 |
Target: 5'- -cGCGAcccggcGCUGCCGCCCGcgaagaGGCGGAg -3' miRNA: 3'- uuCGCU------CGGCGGCGGGCugg---CUGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 227671 | 0.69 | 0.491269 |
Target: 5'- aGAGCGGcGgCGCCGCCggCGACCGagacgacgacggcgGCGGGg -3' miRNA: 3'- -UUCGCU-CgGCGGCGG--GCUGGC--------------UGCCU- -5' |
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9085 | 3' | -64 | NC_002512.2 | + | 129876 | 0.69 | 0.49304 |
Target: 5'- cGGCGGgggauucGCCGUCGCCCucGCCGACGa- -3' miRNA: 3'- uUCGCU-------CGGCGGCGGGc-UGGCUGCcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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