miRNA display CGI


Results 81 - 100 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 111797 0.67 0.611002
Target:  5'- -cGCGcGGUCGCCGCCgGcGCCGgagccgcccccuccGCGGAg -3'
miRNA:   3'- uuCGC-UCGGCGGCGGgC-UGGC--------------UGCCU- -5'
9085 3' -64 NC_002512.2 + 129753 0.67 0.604393
Target:  5'- cGGUccGCCGCCGuCCaCGACggUGACGGAg -3'
miRNA:   3'- uUCGcuCGGCGGC-GG-GCUG--GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 128772 0.67 0.604393
Target:  5'- -cGCGAGCgcaCGCCGCgCCGcgcGCUGGcCGGGg -3'
miRNA:   3'- uuCGCUCG---GCGGCG-GGC---UGGCU-GCCU- -5'
9085 3' -64 NC_002512.2 + 111094 0.67 0.604393
Target:  5'- gGGGCccacAGCUcCCGCCCGG-CGGCGGAg -3'
miRNA:   3'- -UUCGc---UCGGcGGCGGGCUgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 145340 0.67 0.604393
Target:  5'- cGAGCGccucGCCgcGCCGCCCGacGCCGGCu-- -3'
miRNA:   3'- -UUCGCu---CGG--CGGCGGGC--UGGCUGccu -5'
9085 3' -64 NC_002512.2 + 157153 0.67 0.604393
Target:  5'- gGGGCGGGCgGCgGgCCGGgCGGCGuGGg -3'
miRNA:   3'- -UUCGCUCGgCGgCgGGCUgGCUGC-CU- -5'
9085 3' -64 NC_002512.2 + 38395 0.67 0.604393
Target:  5'- gGAGCGcgccGGUCGCCGCgCUGuCCGGCGc- -3'
miRNA:   3'- -UUCGC----UCGGCGGCG-GGCuGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 94677 0.67 0.604393
Target:  5'- cGGgGGGCCcCCcgGCCCG-CUGGCGGAc -3'
miRNA:   3'- uUCgCUCGGcGG--CGGGCuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 190134 0.67 0.604393
Target:  5'- -uGCGuGCUGCuCGCCUGGCCcacCGGGu -3'
miRNA:   3'- uuCGCuCGGCG-GCGGGCUGGcu-GCCU- -5'
9085 3' -64 NC_002512.2 + 170055 0.67 0.604393
Target:  5'- uGGCc-GCCGCCGCCgCGGCCGccuucuUGGGc -3'
miRNA:   3'- uUCGcuCGGCGGCGG-GCUGGCu-----GCCU- -5'
9085 3' -64 NC_002512.2 + 95993 0.67 0.604393
Target:  5'- cGGCGu-CCGgCGCCgCGACCGccagGCGGAa -3'
miRNA:   3'- uUCGCucGGCgGCGG-GCUGGC----UGCCU- -5'
9085 3' -64 NC_002512.2 + 65426 0.67 0.604393
Target:  5'- cGGGCG-GUCGUCGCCCccGCCGAgGGc -3'
miRNA:   3'- -UUCGCuCGGCGGCGGGc-UGGCUgCCu -5'
9085 3' -64 NC_002512.2 + 34954 0.67 0.604393
Target:  5'- gGAGCgGAGCgGCCGCgaCCGGguCCGGCuGGGc -3'
miRNA:   3'- -UUCG-CUCGgCGGCG--GGCU--GGCUG-CCU- -5'
9085 3' -64 NC_002512.2 + 79473 0.67 0.604393
Target:  5'- gGGGCGA-CCGCgCGCCCG-UgGGCGGu -3'
miRNA:   3'- -UUCGCUcGGCG-GCGGGCuGgCUGCCu -5'
9085 3' -64 NC_002512.2 + 10216 0.67 0.604393
Target:  5'- --uCGGGCgGCgCGCCCaGAucCCGACGGGc -3'
miRNA:   3'- uucGCUCGgCG-GCGGG-CU--GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 7320 0.67 0.604393
Target:  5'- cGGCGGGCCGCgGCggGACgGuCGGGu -3'
miRNA:   3'- uUCGCUCGGCGgCGggCUGgCuGCCU- -5'
9085 3' -64 NC_002512.2 + 200789 0.67 0.604393
Target:  5'- uGGCc-GCCGCCGCCgaaGACgaGGCGGGa -3'
miRNA:   3'- uUCGcuCGGCGGCGGg--CUGg-CUGCCU- -5'
9085 3' -64 NC_002512.2 + 49326 0.67 0.594967
Target:  5'- aGAGCcaccgGAGcCCGCCGCaagcgCCGAUCGACGa- -3'
miRNA:   3'- -UUCG-----CUC-GGCGGCG-----GGCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 48360 0.67 0.594967
Target:  5'- -uGCGAGCUGCUGaaCGGCagcgaCGACGGGa -3'
miRNA:   3'- uuCGCUCGGCGGCggGCUG-----GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 64307 0.67 0.594967
Target:  5'- uGGgGAGCgGCUGCCCGGCCaccACGu- -3'
miRNA:   3'- uUCgCUCGgCGGCGGGCUGGc--UGCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.