miRNA display CGI


Results 101 - 120 of 327 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 225476 0.67 0.594967
Target:  5'- cAGC-AGCCGCCG-UCGACCGcgaucuACGGGg -3'
miRNA:   3'- uUCGcUCGGCGGCgGGCUGGC------UGCCU- -5'
9085 3' -64 NC_002512.2 + 130073 0.67 0.594967
Target:  5'- cGGUG-GCCGCCaGCUCGuaguacCCGACGGc -3'
miRNA:   3'- uUCGCuCGGCGG-CGGGCu-----GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 184539 0.67 0.594967
Target:  5'- gGGGUcAGCCgGCgGCgCgGGCCGGCGGAc -3'
miRNA:   3'- -UUCGcUCGG-CGgCG-GgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 220118 0.67 0.594967
Target:  5'- -cGUGAGCCGCCaCgCgGGgCGGCGGGu -3'
miRNA:   3'- uuCGCUCGGCGGcG-GgCUgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 194977 0.67 0.592143
Target:  5'- gAGGCGcauaggacguccauGGCUGuCCGCuCCGACCGAacccgugucuCGGAa -3'
miRNA:   3'- -UUCGC--------------UCGGC-GGCG-GGCUGGCU----------GCCU- -5'
9085 3' -64 NC_002512.2 + 75100 0.67 0.585564
Target:  5'- gGGGCucGAcGUCGCCGCCUGGCgGAcaCGGGg -3'
miRNA:   3'- -UUCG--CU-CGGCGGCGGGCUGgCU--GCCU- -5'
9085 3' -64 NC_002512.2 + 127221 0.67 0.585564
Target:  5'- cAGCGGGCgGCCGCCCucuccCCGGucuacgacauCGGGg -3'
miRNA:   3'- uUCGCUCGgCGGCGGGcu---GGCU----------GCCU- -5'
9085 3' -64 NC_002512.2 + 73453 0.67 0.585564
Target:  5'- ---gGAGCCcCCcaGCCCGGCCG-CGGAc -3'
miRNA:   3'- uucgCUCGGcGG--CGGGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 218228 0.67 0.585564
Target:  5'- cGGCGGGCCGCgGCgCCGAUauaUGucCGGGu -3'
miRNA:   3'- uUCGCUCGGCGgCG-GGCUG---GCu-GCCU- -5'
9085 3' -64 NC_002512.2 + 211176 0.67 0.585564
Target:  5'- cGAGCGcGUCGCCGCCCuGCU--CGGGg -3'
miRNA:   3'- -UUCGCuCGGCGGCGGGcUGGcuGCCU- -5'
9085 3' -64 NC_002512.2 + 172879 0.67 0.585564
Target:  5'- cGGUcAGaCCGCCGaCCCGGCCGcccACGGc -3'
miRNA:   3'- uUCGcUC-GGCGGC-GGGCUGGC---UGCCu -5'
9085 3' -64 NC_002512.2 + 117094 0.67 0.585564
Target:  5'- -uGCGGGCCGCCcuggaCCCGGCaCaGCGGc -3'
miRNA:   3'- uuCGCUCGGCGGc----GGGCUG-GcUGCCu -5'
9085 3' -64 NC_002512.2 + 107021 0.67 0.585564
Target:  5'- aGAGcCGGGCgCGCU-CCCGAcggaagagggacCCGACGGAg -3'
miRNA:   3'- -UUC-GCUCG-GCGGcGGGCU------------GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 97856 0.67 0.585564
Target:  5'- gAGGCGAcGaCCGagacggacCCGCCCG-CCGACGcGAg -3'
miRNA:   3'- -UUCGCU-C-GGC--------GGCGGGCuGGCUGC-CU- -5'
9085 3' -64 NC_002512.2 + 95317 0.67 0.585564
Target:  5'- -cGCGGGCCGCCGUaccggaacauguUCGGCCccaGGAa -3'
miRNA:   3'- uuCGCUCGGCGGCG------------GGCUGGcugCCU- -5'
9085 3' -64 NC_002512.2 + 217800 0.67 0.585564
Target:  5'- uGGCGGaucggcGUCGCCGuCCCGAucgUCGACGGc -3'
miRNA:   3'- uUCGCU------CGGCGGC-GGGCU---GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 22785 0.67 0.585564
Target:  5'- -cGaCGAGCUGCgCGCCCGcuACCacaagGGCGGGa -3'
miRNA:   3'- uuC-GCUCGGCG-GCGGGC--UGG-----CUGCCU- -5'
9085 3' -64 NC_002512.2 + 101605 0.67 0.585564
Target:  5'- -uGCGGGCgGCCGUCgGcCCGGCGc- -3'
miRNA:   3'- uuCGCUCGgCGGCGGgCuGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 226789 0.67 0.584625
Target:  5'- cGGGCGAcgccguggucucgGCCGCCGCCgUGGCCGcCGc- -3'
miRNA:   3'- -UUCGCU-------------CGGCGGCGG-GCUGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 3812 0.67 0.583687
Target:  5'- aGAGCGAGCCGUCgacggaagaguagguGCCgaGGCCGAggucgcagucguagaCGGAg -3'
miRNA:   3'- -UUCGCUCGGCGG---------------CGGg-CUGGCU---------------GCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.