miRNA display CGI


Results 81 - 100 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 75143 0.66 0.661108
Target:  5'- -cGCGAcGCCGUCGgaCgCGGCCG-CGGAc -3'
miRNA:   3'- uuCGCU-CGGCGGCg-G-GCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 75276 0.68 0.557549
Target:  5'- cGAGCGGGCgGCgGUUCGAaCCGAccaaucCGGAg -3'
miRNA:   3'- -UUCGCUCGgCGgCGGGCU-GGCU------GCCU- -5'
9085 3' -64 NC_002512.2 + 75568 0.71 0.378194
Target:  5'- gGGGCgGGGCCGCCGCCgucgcgguCGACgUGGCGGc -3'
miRNA:   3'- -UUCG-CUCGGCGGCGG--------GCUG-GCUGCCu -5'
9085 3' -64 NC_002512.2 + 75895 0.7 0.451422
Target:  5'- cGGCGucgcucuuucuguuuGCCGCCGCCgGcGCCGcCGGAc -3'
miRNA:   3'- uUCGCu--------------CGGCGGCGGgC-UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 76541 0.72 0.32756
Target:  5'- cAGCGGGacCCGCCGaCCCgGACCGgcccaGCGGAa -3'
miRNA:   3'- uUCGCUC--GGCGGC-GGG-CUGGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 76583 0.66 0.651668
Target:  5'- cAGCGGGaaCCgGCCGaCCCgGACCGacccaGCGGAg -3'
miRNA:   3'- uUCGCUC--GG-CGGC-GGG-CUGGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 76849 0.66 0.661108
Target:  5'- -cGCuc-CCGCCGaCCCGACCGG-GGAc -3'
miRNA:   3'- uuCGcucGGCGGC-GGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 76874 0.66 0.661108
Target:  5'- -cGCuc-CCGCCGaCCCGACCGG-GGAc -3'
miRNA:   3'- uuCGcucGGCGGC-GGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 76899 0.66 0.661108
Target:  5'- -cGCuc-CCGCCGaCCCGACCGG-GGAc -3'
miRNA:   3'- uuCGcucGGCGGC-GGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 76924 0.66 0.661108
Target:  5'- -cGCuc-CCGCCGaCCCGACCGG-GGAc -3'
miRNA:   3'- uuCGcucGGCGGC-GGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 77061 0.66 0.670529
Target:  5'- uGGCGcugcugauccuGCuCGCCGCCCG-CCGucgccGCGGAc -3'
miRNA:   3'- uUCGCu----------CG-GCGGCGGGCuGGC-----UGCCU- -5'
9085 3' -64 NC_002512.2 + 77957 0.66 0.632753
Target:  5'- -cGCGAGCCGgguUCGUCUcgggGACCGACGa- -3'
miRNA:   3'- uuCGCUCGGC---GGCGGG----CUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 78322 0.67 0.56685
Target:  5'- -uGCGAG-CGaCCGUCCgGACCG-CGGAa -3'
miRNA:   3'- uuCGCUCgGC-GGCGGG-CUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 78928 0.68 0.539085
Target:  5'- -cGCGAGcCCGCCuccgaGUCCGcgGCCGcCGGAg -3'
miRNA:   3'- uuCGCUC-GGCGG-----CGGGC--UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 79142 0.69 0.502827
Target:  5'- cGGGUcuGGGCCG-CGCgCgGGCCGACGGGa -3'
miRNA:   3'- -UUCG--CUCGGCgGCG-GgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 79364 0.71 0.362464
Target:  5'- -cGCG-GCCGCCGCguggaacugcaccCCGACCcGCGGGc -3'
miRNA:   3'- uuCGCuCGGCGGCG-------------GGCUGGcUGCCU- -5'
9085 3' -64 NC_002512.2 + 79473 0.67 0.604393
Target:  5'- gGGGCGA-CCGCgCGCCCG-UgGGCGGu -3'
miRNA:   3'- -UUCGCUcGGCG-GCGGGCuGgCUGCCu -5'
9085 3' -64 NC_002512.2 + 80887 0.66 0.661108
Target:  5'- -cGCG-GCgGCCcCCCGGCCGGUGGu -3'
miRNA:   3'- uuCGCuCGgCGGcGGGCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 80916 0.68 0.557549
Target:  5'- uGGUGGGUCGCgcgggCGCCCucCCGGCGGu -3'
miRNA:   3'- uUCGCUCGGCG-----GCGGGcuGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 81793 0.7 0.425589
Target:  5'- cGGCGccGCCGCCGCC--GCCGGgGGAc -3'
miRNA:   3'- uUCGCu-CGGCGGCGGgcUGGCUgCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.