miRNA display CGI


Results 101 - 120 of 327 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 82015 0.84 0.054643
Target:  5'- cGGCGAGCCGUCGCCCGggucggggucgcGCCGGCGGc -3'
miRNA:   3'- uUCGCUCGGCGGCGGGC------------UGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 82188 0.67 0.613837
Target:  5'- aGAGCccGuCCGCCGUCgGGCCGGCGu- -3'
miRNA:   3'- -UUCGcuC-GGCGGCGGgCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 82322 0.66 0.661108
Target:  5'- uAGaGGGCCGCgGgCCGccCCGGCGGGu -3'
miRNA:   3'- uUCgCUCGGCGgCgGGCu-GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 83170 0.71 0.378194
Target:  5'- -cGCG-GCCGCCGCCCcGCCGuCGu- -3'
miRNA:   3'- uuCGCuCGGCGGCGGGcUGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 83781 0.68 0.511797
Target:  5'- cGGCGccgccGCCGCCGCCgagGACCGcguCGGGc -3'
miRNA:   3'- uUCGCu----CGGCGGCGGg--CUGGCu--GCCU- -5'
9085 3' -64 NC_002512.2 + 87856 0.8 0.103874
Target:  5'- cGGCGGGUCGCCGgccCCCGGCCG-CGGAa -3'
miRNA:   3'- uUCGCUCGGCGGC---GGGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 90639 0.66 0.642214
Target:  5'- -cGCGAcCCGgCGCCgCGGCCG-CGGu -3'
miRNA:   3'- uuCGCUcGGCgGCGG-GCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 90860 0.72 0.348629
Target:  5'- uGGaCGAGCCGuCCGCgCCG-CCGuCGGAc -3'
miRNA:   3'- uUC-GCUCGGC-GGCG-GGCuGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 91869 0.69 0.493926
Target:  5'- --cCGAgGCCGCCGUCCGGCgcgggCGGCGGc -3'
miRNA:   3'- uucGCU-CGGCGGCGGGCUG-----GCUGCCu -5'
9085 3' -64 NC_002512.2 + 92634 0.68 0.548292
Target:  5'- cGGCG-GCCGCCgGCgCCGGgacCCGcGCGGAu -3'
miRNA:   3'- uUCGCuCGGCGG-CG-GGCU---GGC-UGCCU- -5'
9085 3' -64 NC_002512.2 + 92682 0.72 0.32075
Target:  5'- -cGcCGGGCgCGCCGCCC-ACCGgGCGGAc -3'
miRNA:   3'- uuC-GCUCG-GCGGCGGGcUGGC-UGCCU- -5'
9085 3' -64 NC_002512.2 + 93712 0.7 0.417445
Target:  5'- cGGCGAccccGCCGCgCGgCgGAUCGACGGGg -3'
miRNA:   3'- uUCGCU----CGGCG-GCgGgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 94677 0.67 0.604393
Target:  5'- cGGgGGGCCcCCcgGCCCG-CUGGCGGAc -3'
miRNA:   3'- uUCgCUCGGcGG--CGGGCuGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 94817 0.66 0.651668
Target:  5'- gGGGgGAGCCGUC-CCgGAgCCGcCGGAg -3'
miRNA:   3'- -UUCgCUCGGCGGcGGgCU-GGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 94940 0.66 0.651668
Target:  5'- cGGCGAGCCGgaGCCC--CCGGaGGAa -3'
miRNA:   3'- uUCGCUCGGCggCGGGcuGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 95117 0.7 0.425589
Target:  5'- cGGCGGGcCCGCCGacgaaCCGGacgguccgccCCGGCGGGu -3'
miRNA:   3'- uUCGCUC-GGCGGCg----GGCU----------GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 95317 0.67 0.585564
Target:  5'- -cGCGGGCCGCCGUaccggaacauguUCGGCCccaGGAa -3'
miRNA:   3'- uuCGCUCGGCGGCG------------GGCUGGcugCCU- -5'
9085 3' -64 NC_002512.2 + 95675 0.66 0.679923
Target:  5'- -cGUGAGCgcgCGuCCGCCgGGCCuccGGCGGGg -3'
miRNA:   3'- uuCGCUCG---GC-GGCGGgCUGG---CUGCCU- -5'
9085 3' -64 NC_002512.2 + 95993 0.67 0.604393
Target:  5'- cGGCGu-CCGgCGCCgCGACCGccagGCGGAa -3'
miRNA:   3'- uUCGCucGGCgGCGG-GCUGGC----UGCCU- -5'
9085 3' -64 NC_002512.2 + 96298 0.76 0.188299
Target:  5'- -cGCGGGCCGCCGCC--GCgGGCGGGc -3'
miRNA:   3'- uuCGCUCGGCGGCGGgcUGgCUGCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.