miRNA display CGI


Results 121 - 140 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 96645 0.69 0.466809
Target:  5'- -cGCGAccggggcGCCGCCGCCCucCCGuccucgcuggGCGGAc -3'
miRNA:   3'- uuCGCU-------CGGCGGCGGGcuGGC----------UGCCU- -5'
9085 3' -64 NC_002512.2 + 96755 0.68 0.539085
Target:  5'- cGAGCgGGGCC-CCGUCCGAgCGGCGc- -3'
miRNA:   3'- -UUCG-CUCGGcGGCGGGCUgGCUGCcu -5'
9085 3' -64 NC_002512.2 + 96944 0.7 0.442156
Target:  5'- cAGCGGGgCGUCGCgCCGACCGuCGu- -3'
miRNA:   3'- uUCGCUCgGCGGCG-GGCUGGCuGCcu -5'
9085 3' -64 NC_002512.2 + 97856 0.67 0.585564
Target:  5'- gAGGCGAcGaCCGagacggacCCGCCCG-CCGACGcGAg -3'
miRNA:   3'- -UUCGCU-C-GGC--------GGCGGGCuGGCUGC-CU- -5'
9085 3' -64 NC_002512.2 + 98130 0.69 0.485098
Target:  5'- gGGGCGcuggucgucGCgGCCGCCCGccCCGGCGGu -3'
miRNA:   3'- -UUCGCu--------CGgCGGCGGGCu-GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 99036 0.7 0.442156
Target:  5'- -uGgGGGCC-UCGCCCGACCGcCGGu -3'
miRNA:   3'- uuCgCUCGGcGGCGGGCUGGCuGCCu -5'
9085 3' -64 NC_002512.2 + 99105 0.67 0.569648
Target:  5'- uGGCGAGCCcggGCCGCUccaagagaucgcgcaCGGCCGgaucgucgggggaACGGAg -3'
miRNA:   3'- uUCGCUCGG---CGGCGG---------------GCUGGC-------------UGCCU- -5'
9085 3' -64 NC_002512.2 + 99729 0.68 0.539085
Target:  5'- -cGCGGGCCggcccGCCGCCgGGCCccGCGGc -3'
miRNA:   3'- uuCGCUCGG-----CGGCGGgCUGGc-UGCCu -5'
9085 3' -64 NC_002512.2 + 101605 0.67 0.585564
Target:  5'- -uGCGGGCgGCCGUCgGcCCGGCGc- -3'
miRNA:   3'- uuCGCUCGgCGGCGGgCuGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 101634 0.74 0.240212
Target:  5'- -cGCGAGUCGCCGCUCGaggggagcgcggcgGCCG-CGGAc -3'
miRNA:   3'- uuCGCUCGGCGGCGGGC--------------UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 101751 0.72 0.32756
Target:  5'- gAAGaCcAGCCGCCGCCUGACCuucggcgaGACGGc -3'
miRNA:   3'- -UUC-GcUCGGCGGCGGGCUGG--------CUGCCu -5'
9085 3' -64 NC_002512.2 + 101977 0.67 0.56685
Target:  5'- cGGCGGGCuCGUgG-CCGAuCCGACGGu -3'
miRNA:   3'- uUCGCUCG-GCGgCgGGCU-GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 102606 0.68 0.557549
Target:  5'- -cGUcGGCCGCCGCCaaCGcCCGGgGGAa -3'
miRNA:   3'- uuCGcUCGGCGGCGG--GCuGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 102669 0.68 0.557549
Target:  5'- gGAGaGGGCgGCCGCCCGcuguCCGG-GGAg -3'
miRNA:   3'- -UUCgCUCGgCGGCGGGCu---GGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 102836 0.67 0.56685
Target:  5'- uGAGCuucccuccGCCGCCGuacgcguauCCCGACCGGgGGGa -3'
miRNA:   3'- -UUCGcu------CGGCGGC---------GGGCUGGCUgCCU- -5'
9085 3' -64 NC_002512.2 + 103221 0.74 0.247276
Target:  5'- gAGGCGGcucgcGUCGCCGCCCG-UCGACGGc -3'
miRNA:   3'- -UUCGCU-----CGGCGGCGGGCuGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 103441 0.77 0.163718
Target:  5'- aAGGCG-GCCGCCGCcgucgCCGGCCgGGCGGGa -3'
miRNA:   3'- -UUCGCuCGGCGGCG-----GGCUGG-CUGCCU- -5'
9085 3' -64 NC_002512.2 + 104872 0.69 0.476346
Target:  5'- cAGCGGGCggCGCCGa-CGGCgCGACGGGg -3'
miRNA:   3'- uUCGCUCG--GCGGCggGCUG-GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 105014 0.69 0.459081
Target:  5'- ---gGGGCCGCCGCCCGGuucUCGucCGGGu -3'
miRNA:   3'- uucgCUCGGCGGCGGGCU---GGCu-GCCU- -5'
9085 3' -64 NC_002512.2 + 105048 0.67 0.613837
Target:  5'- -cGCGGGCC-UCGCUCGGCgaCGGCGGc -3'
miRNA:   3'- uuCGCUCGGcGGCGGGCUG--GCUGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.