miRNA display CGI


Results 61 - 80 of 327 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9085 3' -64 NC_002512.2 + 184624 0.79 0.126049
Target:  5'- -cGCGAGCCcCCGCCggCGGCCGACGGc -3'
miRNA:   3'- uuCGCUCGGcGGCGG--GCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 184581 0.69 0.49304
Target:  5'- -cGCGGGCCGgcagggcggcgguCCGUCCGACCcGCGaGAc -3'
miRNA:   3'- uuCGCUCGGC-------------GGCGGGCUGGcUGC-CU- -5'
9085 3' -64 NC_002512.2 + 184539 0.67 0.594967
Target:  5'- gGGGUcAGCCgGCgGCgCgGGCCGGCGGAc -3'
miRNA:   3'- -UUCGcUCGG-CGgCG-GgCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 184360 0.72 0.334477
Target:  5'- cAAGuCGccGCCGCCGCCCG-CCG-CGGGc -3'
miRNA:   3'- -UUC-GCu-CGGCGGCGGGCuGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 183513 0.66 0.670529
Target:  5'- aGGGgGAgGCCGUccuCGCCUGGCUG-CGGAc -3'
miRNA:   3'- -UUCgCU-CGGCG---GCGGGCUGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 175630 0.68 0.557549
Target:  5'- -cGcCGAcGCCGCCGCCCugcGCUG-CGGAc -3'
miRNA:   3'- uuC-GCU-CGGCGGCGGGc--UGGCuGCCU- -5'
9085 3' -64 NC_002512.2 + 172879 0.67 0.585564
Target:  5'- cGGUcAGaCCGCCGaCCCGGCCGcccACGGc -3'
miRNA:   3'- uUCGcUC-GGCGGC-GGGCUGGC---UGCCu -5'
9085 3' -64 NC_002512.2 + 170055 0.67 0.604393
Target:  5'- uGGCc-GCCGCCGCCgCGGCCGccuucuUGGGc -3'
miRNA:   3'- uUCGcuCGGCGGCGG-GCUGGCu-----GCCU- -5'
9085 3' -64 NC_002512.2 + 168967 0.66 0.679923
Target:  5'- gAAGCGcuucgcGGUCGguguCCGCUCGACCGAgCGGu -3'
miRNA:   3'- -UUCGC------UCGGC----GGCGGGCUGGCU-GCCu -5'
9085 3' -64 NC_002512.2 + 162006 0.72 0.32756
Target:  5'- -uGCGGgauGCgGaCCGCCUGGCCGACGGc -3'
miRNA:   3'- uuCGCU---CGgC-GGCGGGCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 158850 0.7 0.450575
Target:  5'- gGAGCGGggggacgucGUCGUCGaCCGGCCGGCGGc -3'
miRNA:   3'- -UUCGCU---------CGGCGGCgGGCUGGCUGCCu -5'
9085 3' -64 NC_002512.2 + 157153 0.67 0.604393
Target:  5'- gGGGCGGGCgGCgGgCCGGgCGGCGuGGg -3'
miRNA:   3'- -UUCGCUCGgCGgCgGGCUgGCUGC-CU- -5'
9085 3' -64 NC_002512.2 + 156490 0.69 0.467672
Target:  5'- cGGCGGGCUgggcggacacgGCgGCCUGGgCGGCGGGg -3'
miRNA:   3'- uUCGCUCGG-----------CGgCGGGCUgGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 155275 0.72 0.348629
Target:  5'- -cGgGAGCCgagGCgGCUCGAgCCGACGGAg -3'
miRNA:   3'- uuCgCUCGG---CGgCGGGCU-GGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 154694 0.72 0.32756
Target:  5'- --cCGAGCgGCCGUCCGGCgucgagcggcgCGACGGAa -3'
miRNA:   3'- uucGCUCGgCGGCGGGCUG-----------GCUGCCU- -5'
9085 3' -64 NC_002512.2 + 154148 0.68 0.52993
Target:  5'- -cGCGcucGGUCGCCuCCCGuuCGGCGGAc -3'
miRNA:   3'- uuCGC---UCGGCGGcGGGCugGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 153248 0.7 0.450575
Target:  5'- gAAGCGAGCCGggagaCGAUCGACGGAu -3'
miRNA:   3'- -UUCGCUCGGCggcggGCUGGCUGCCU- -5'
9085 3' -64 NC_002512.2 + 152267 0.76 0.179763
Target:  5'- cAGCGAGUCGUCGCUCGucguuCCGGCGGc -3'
miRNA:   3'- uUCGCUCGGCGGCGGGCu----GGCUGCCu -5'
9085 3' -64 NC_002512.2 + 151219 0.67 0.613837
Target:  5'- uAGGCuccGAGCCccggcGCCgGCUCGACCGACGc- -3'
miRNA:   3'- -UUCG---CUCGG-----CGG-CGGGCUGGCUGCcu -5'
9085 3' -64 NC_002512.2 + 150968 0.66 0.642214
Target:  5'- gAGGCGGGCucgCGUCGCCauggugaccgcUGAUUGACGGGu -3'
miRNA:   3'- -UUCGCUCG---GCGGCGG-----------GCUGGCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.